UHGV-0153314

Genome information

Genome length 40,406 bps

CDS count 49

Completeness 98.01% (high-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153314
vOTU ID	vOTU-010587
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_461543
BioSample	SAMN05024037
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.01% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.34
Jumbo phage	No

Genome content
Genome length	40,406 bps
GC content	40.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.40%
Average CDS length	758.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153314_1	KOfam	K14059	int; integrase	NA
UHGV-0153314_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0153314_1	UniRef90	UniRef90_A0A496PAJ5	Site-specific integrase	NA
UHGV-0153314_1	eggNOG-mapper	1401067.HMPREF0872_03560	Belongs to the 'phage' integrase family	NA
UHGV-0153314_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153314_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0153314_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0153314_2	eggNOG-mapper	742743.HMPREF9453_01874	NA	NA
UHGV-0153314_2	Structural annotation	PF12007	NA	NA
UHGV-0153314_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0153314_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0153314_3	UniRef90	UniRef90_F5KZK5	DNA-binding helix-turn-helix protein	NA
UHGV-0153314_3	eggNOG-mapper	1000569.HMPREF1040_0380	Peptidase S24-like	NA
UHGV-0153314_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153314_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0153314_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0153314_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0153314_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0153314_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153314_4	UniRef90	UniRef90_F5KZK6	DNA-binding helix-turn-helix protein	NA
UHGV-0153314_4	eggNOG-mapper	521393.JH806632_gene1096	Helix-turn-helix XRE-family like proteins	NA
UHGV-0153314_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153314_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0153314_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0153314_5	PHROG	phrog_6058	NA	unknown function
UHGV-0153314_5	Structural annotation	PF09035, NF033787	NA	NA
UHGV-0153314_6	PHROG	phrog_31038	NA	unknown function
UHGV-0153314_7	PHROG	phrog_29542	NA	unknown function
UHGV-0153314_8	PHROG	phrog_30876	NA	unknown function
UHGV-0153314_8	UniRef90	UniRef90_F5KZK9	Conserved domain protein	NA
UHGV-0153314_9	UniRef90	UniRef90_D6KLD9	Surface antigen (D15)	NA
UHGV-0153314_10	PHROG	phrog_35266	NA	unknown function
UHGV-0153314_10	UniRef90	UniRef90_UPI001A614D00	choline-binding protein A	NA
UHGV-0153314_11	PHROG	phrog_29844	NA	unknown function
UHGV-0153314_12	PHROG	phrog_16315	NA	unknown function
UHGV-0153314_12	UniRef90	UniRef90_UPI000B139567	PcfJ domain-containing protein	NA
UHGV-0153314_12	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-0153314_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0153314_12	Structural annotation	PF14284	NA	NA
UHGV-0153314_13	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0153314_13	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153314_13	UniRef90	UniRef90_A0A660M765	AAA_23 domain-containing protein	NA
UHGV-0153314_13	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-0153314_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-0153314_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0153314_13	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0153314_14	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0153314_14	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0153314_14	UniRef90	UniRef90_F5KZL5	BRO family, N-terminal domain protein	NA
UHGV-0153314_14	eggNOG-mapper	1401067.HMPREF0872_03480	BRO family, N-terminal domain	NA
UHGV-0153314_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0153314_14	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0153314_14	COG	COG3617	Prophage antirepressor	NA
UHGV-0153314_14	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0153314_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0153314_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0153314_15	UniRef90	UniRef90_A0A811GJA5	Protein RecT	NA
UHGV-0153314_15	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-0153314_15	Pfam	PF03837	RecT family	RecT
UHGV-0153314_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0153314_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0153314_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0153314_16	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0153314_16	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0153314_16	UniRef90	UniRef90_F5KZL7	Lactamase_B domain-containing protein	NA
UHGV-0153314_16	eggNOG-mapper	1401067.HMPREF0872_03470	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0153314_16	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0153314_16	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0153314_16	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0153314_17	PHROG	phrog_29533	NA	unknown function
UHGV-0153314_18	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0153314_18	UniRef90	UniRef90_D6KLE8	NA	NA
UHGV-0153314_18	eggNOG-mapper	1401067.HMPREF0872_03460	NA	NA
UHGV-0153314_18	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0153314_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0153314_18	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0153314_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0153314_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0153314_19	UniRef90	UniRef90_UPI001A5B77C0	ATP-binding protein	NA
UHGV-0153314_19	eggNOG-mapper	1401067.HMPREF0872_03455	DNA-dependent DNA replication	NA
UHGV-0153314_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0153314_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0153314_19	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0153314_20	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0153314_20	UniRef90	UniRef90_D6KLF0	Prophage Lp2 protein 24	NA
UHGV-0153314_20	eggNOG-mapper	60520.HR47_13580	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0153314_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0153314_20	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0153314_21	PHROG	phrog_918	NA	unknown function
UHGV-0153314_21	eggNOG-mapper	1401067.HMPREF0872_03440	NA	NA
UHGV-0153314_21	Pfam	PF19791	NA	DUF6275
UHGV-0153314_22	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0153314_22	UniRef90	UniRef90_UPI0005715C3A	methyltransferase	NA
UHGV-0153314_22	eggNOG-mapper	1401067.HMPREF0872_03435	methyltransferase	NA
UHGV-0153314_22	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0153314_22	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0153314_22	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0153314_22	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0153314_23	PHROG	phrog_1558	NA	unknown function
UHGV-0153314_23	UniRef90	UniRef90_UPI000BB98A80	sigma-70 region 4 domain-containing protein	NA
UHGV-0153314_23	eggNOG-mapper	1401067.HMPREF0872_03430	NA	NA
UHGV-0153314_23	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0153314_24	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0153314_24	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-0153314_24	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0153314_25	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0153314_25	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0153314_25	UniRef90	UniRef90_E1LBM6	Phage terminase large subunit (GpA)	NA
UHGV-0153314_25	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-0153314_25	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0153314_25	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0153314_25	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0153314_25	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0153314_25	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0153314_26	PHROG	phrog_20307	NA	unknown function
UHGV-0153314_26	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-0153314_26	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0153314_27	PHROG	phrog_21	portal protein	head and packaging
UHGV-0153314_27	UniRef90	UniRef90_F5KZM8	Phage portal protein, lambda family	NA
UHGV-0153314_27	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-0153314_27	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0153314_27	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0153314_27	COG	COG5511	Phage capsid protein	NA
UHGV-0153314_27	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0153314_28	KOfam	K06904	NA	NA
UHGV-0153314_28	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0153314_28	UniRef90	UniRef90_F5KZM9	Caudovirus prohead protease	NA
UHGV-0153314_28	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-0153314_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0153314_28	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0153314_28	COG	COG3087	Cell division protein FtsN	NA
UHGV-0153314_28	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0153314_29	PHROG	phrog_122	head decoration	head and packaging
UHGV-0153314_29	UniRef90	UniRef90_B8F4K6	Putative RecA/RadA recombinase	NA
UHGV-0153314_29	eggNOG-mapper	484770.UFO1_2460	NA	NA
UHGV-0153314_29	Pfam	PF09956	NA	DUF2190
UHGV-0153314_29	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0153314_29	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0153314_30	PHROG	phrog_27032	NA	unknown function
UHGV-0153314_30	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0153314_31	PHROG	phrog_222	tail protein	tail
UHGV-0153314_31	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-0153314_31	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-0153314_31	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0153314_32	PHROG	phrog_17431	NA	unknown function
UHGV-0153314_32	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-0153314_32	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0153314_33	PHROG	phrog_290	minor tail protein	tail
UHGV-0153314_33	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-0153314_33	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0153314_33	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0153314_33	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0153314_34	PHROG	phrog_27248	NA	unknown function
UHGV-0153314_35	PHROG	phrog_23549	NA	unknown function
UHGV-0153314_35	UniRef90	UniRef90_F5KZN6	Conserved domain protein	NA
UHGV-0153314_35	Structural annotation	PF08809	NA	NA
UHGV-0153314_36	PHROG	phrog_22443	NA	unknown function
UHGV-0153314_36	UniRef90	UniRef90_F5KZN7	Phage tail tape measure protein, lambda family	NA
UHGV-0153314_36	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0153314_36	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0153314_36	COG	COG4913	NA	NA
UHGV-0153314_36	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0153314_37	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0153314_37	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0153314_38	PHROG	phrog_18	minor tail protein	tail
UHGV-0153314_38	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0153314_38	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0153314_38	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0153314_38	COG	COG4672	Phage tail protein	NA
UHGV-0153314_38	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0153314_39	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0153314_39	PHROG	phrog_329	minor tail protein	tail
UHGV-0153314_39	UniRef90	UniRef90_UPI00068174D5	NlpC/P60 family protein	NA
UHGV-0153314_39	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0153314_39	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0153314_39	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0153314_39	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0153314_40	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0153314_40	UniRef90	UniRef90_F5KZP0	Fibronectin type III domain protein	NA
UHGV-0153314_40	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-0153314_40	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0153314_40	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0153314_40	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0153314_40	COG	COG1511	NA	NA
UHGV-0153314_40	Structural annotation	PF13550, PF00041, PF09294, PF17936, PF14109, NF040662, NF041335, COG4733	NA	NA
UHGV-0153314_41	PHROG	phrog_2427	NA	unknown function
UHGV-0153314_42	PHROG	phrog_25213	NA	unknown function
UHGV-0153314_43	PHROG	phrog_1084	NA	unknown function
UHGV-0153314_43	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0153314_44	PHROG	phrog_22483	NA	unknown function
UHGV-0153314_44	UniRef90	UniRef90_A0A563DAK6	Lysyl-tRNA synthetase	NA
UHGV-0153314_44	eggNOG-mapper	706434.HMPREF9429_00509	NA	NA
UHGV-0153314_44	Structural annotation	PF17936, NF033814	NA	NA
UHGV-0153314_45	PHROG	phrog_8369	hol-like chemotaxis	other
UHGV-0153314_45	eggNOG-mapper	1401067.HMPREF0872_03365	NA	NA
UHGV-0153314_46	PHROG	phrog_27828	NA	unknown function
UHGV-0153314_46	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0153314_46	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0153314_47	PHROG	phrog_5867	endolysin	lysis
UHGV-0153314_47	UniRef90	UniRef90_A0A496P7H7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0153314_47	eggNOG-mapper	1123288.SOV_2c01960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0153314_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0153314_47	Structural annotation	MF_04111	NA	NA
UHGV-0153314_48	PHROG	phrog_18860	NA	unknown function