UHGV-0153325

Genome information

Genome length 31,907 bps

CDS count 48

Completeness 84.11% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153325
vOTU ID	vOTU-016889
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_464653
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.06
Jumbo phage	No

Genome content
Genome length	31,907 bps
GC content	56.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.61%
Average CDS length	612.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153325_1	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0153325_1	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0153325_1	UniRef90	UniRef90_A0A0D8IYS0	HTH cro/C1-type domain-containing protein	NA
UHGV-0153325_1	eggNOG-mapper	445972.ANACOL_00561	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0153325_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0153325_1	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0153325_1	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0153325_2	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0153325_2	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0153325_2	UniRef90	UniRef90_G9RTP2	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0153325_2	eggNOG-mapper	665956.HMPREF1032_02926	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0153325_2	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0153325_2	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0153325_2	COG	COG0338	DNA-adenine methylase	NA
UHGV-0153325_2	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0153325_3	PHROG	phrog_20258	NA	unknown function
UHGV-0153325_3	eggNOG-mapper	665956.HMPREF1032_02927	NA	NA
UHGV-0153325_4	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0153325_4	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0153325_4	UniRef90	UniRef90_A0A372V0X2	SH3b domain-containing protein	NA
UHGV-0153325_4	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0153325_4	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0153325_4	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0153325_4	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0153325_5	KOfam	K14059	int; integrase	NA
UHGV-0153325_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0153325_5	UniRef90	UniRef90_A0A0D8IYN9	Tyr recombinase domain-containing protein	NA
UHGV-0153325_5	eggNOG-mapper	665956.HMPREF1032_02930	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0153325_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0153325_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153325_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0153325_5	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0153325_6	PHROG	phrog_35823	NA	unknown function
UHGV-0153325_6	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0153325_6	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0153325_7	PHROG	phrog_5555	tail protein	tail
UHGV-0153325_7	UniRef90	UniRef90_A0A372V0Z2	Prophage_tail domain-containing protein	NA
UHGV-0153325_7	eggNOG-mapper	999413.HMPREF1094_00205	NA	NA
UHGV-0153325_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0153325_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0153325_7	COG	COG4926	Phage-related protein	NA
UHGV-0153325_7	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0153325_8	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0153325_8	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0153325_9	PHROG	phrog_19074	NA	unknown function
UHGV-0153325_9	UniRef90	UniRef90_A0A372V0T3	Phage tail tape measure protein	NA
UHGV-0153325_9	eggNOG-mapper	1235792.C808_05377	Phage tail tape measure protein, TP901 family	NA
UHGV-0153325_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0153325_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0153325_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0153325_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0153325_10	UniRef90	UniRef90_A0A6I2UAE0	Com family DNA-binding transcriptional regulator	NA
UHGV-0153325_10	eggNOG-mapper	536233.CLO_0895	Mu-like prophage protein Com	NA
UHGV-0153325_10	Pfam	PF10122	NA	Mu-like_Com
UHGV-0153325_11	PHROG	phrog_706	NA	unknown function
UHGV-0153325_11	UniRef90	UniRef90_UPI0003F799BE	bacteriophage Gp15 family protein	NA
UHGV-0153325_11	eggNOG-mapper	1280692.AUJL01000004_gene837	Bacteriophage Gp15 protein	NA
UHGV-0153325_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0153325_11	Structural annotation	PF06854	NA	NA
UHGV-0153325_12	PHROG	phrog_4450	NA	unknown function
UHGV-0153325_12	UniRef90	UniRef90_A0A372V0T5	AP endonuclease	NA
UHGV-0153325_12	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0153325_12	Pfam	PF20378	NA	DUF6673
UHGV-0153325_12	Structural annotation	PF20378	NA	NA
UHGV-0153325_13	PHROG	phrog_3099	NA	unknown function
UHGV-0153325_13	UniRef90	UniRef90_A0A3D0XTH5	S-l_SbsC_C domain-containing protein	NA
UHGV-0153325_13	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0153325_14	PHROG	phrog_3266	tail completion	connector
UHGV-0153325_14	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0153325_14	Structural annotation	PF12691	NA	NA
UHGV-0153325_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0153325_15	UniRef90	UniRef90_A0A372V1A7	Capsid protein	NA
UHGV-0153325_15	eggNOG-mapper	1120746.CCNL01000014_gene2100	Minor capsid protein	NA
UHGV-0153325_15	Structural annotation	PF11114	NA	NA
UHGV-0153325_16	PHROG	phrog_3366	NA	unknown function
UHGV-0153325_16	eggNOG-mapper	411471.SUBVAR_06991	NA	NA
UHGV-0153325_16	Pfam	PF20536	NA	DUF6751
UHGV-0153325_16	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0153325_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0153325_18	UniRef90	UniRef90_A0A6I2U7V7	C2H2-type domain-containing protein	NA
UHGV-0153325_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0153325_19	eggNOG-mapper	665956.HMPREF1032_02951	NA	NA
UHGV-0153325_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0153325_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0153325_20	UniRef90	UniRef90_A0A6N3F6J3	Phage minor structural protein GP20	NA
UHGV-0153325_20	eggNOG-mapper	665956.HMPREF1032_02952	Phage minor structural protein GP20	NA
UHGV-0153325_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0153325_20	Structural annotation	PF06810	NA	NA
UHGV-0153325_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0153325_22	UniRef90	UniRef90_A0A6N3F6N5	Epidermal cell differentiation inhibitor	NA
UHGV-0153325_22	eggNOG-mapper	665956.HMPREF1032_02954	NA	NA
UHGV-0153325_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0153325_22	COG	COG2369	NA	NA
UHGV-0153325_22	Structural annotation	PF06152, PF07737, TIGR01641, COG2369	NA	NA
UHGV-0153325_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0153325_23	UniRef90	UniRef90_G9RTS1	A118 family phage portal protein, putative	NA
UHGV-0153325_23	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0153325_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0153325_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0153325_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0153325_25	UniRef90	UniRef90_A0A372V1B5	PBSX family phage terminase large subunit	NA
UHGV-0153325_25	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0153325_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0153325_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0153325_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0153325_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0153325_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0153325_26	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0153325_28	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0153325_28	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0153325_28	UniRef90	UniRef90_G9RN11	NGN domain-containing protein	NA
UHGV-0153325_28	eggNOG-mapper	665956.HMPREF1032_01630	Transcription termination factor nusG	NA
UHGV-0153325_28	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0153325_28	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0153325_28	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0153325_29	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0153325_29	UniRef90	UniRef90_A0A6I2UDS2	NA	NA
UHGV-0153325_29	eggNOG-mapper	665956.HMPREF1032_02960	NA	NA
UHGV-0153325_29	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0153325_29	Structural annotation	PF11985	NA	NA
UHGV-0153325_30	PHROG	phrog_25462	NA	unknown function
UHGV-0153325_30	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0153325_30	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0153325_31	UniRef90	UniRef90_A0A372V349	NA	NA
UHGV-0153325_31	eggNOG-mapper	665956.HMPREF1032_01633	NA	NA
UHGV-0153325_32	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0153325_32	UniRef90	UniRef90_G9RTS9	Mor domain-containing protein	NA
UHGV-0153325_32	eggNOG-mapper	665956.HMPREF1032_02963	Mor transcription activator family	NA
UHGV-0153325_32	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0153325_32	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0153325_32	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0153325_33	eggNOG-mapper	665956.HMPREF1032_02964	NA	NA
UHGV-0153325_34	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0153325_34	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-0153325_34	eggNOG-mapper	665956.HMPREF1032_02965	Bacteriophage Mu Gam like protein	NA
UHGV-0153325_34	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0153325_34	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0153325_36	Structural annotation	PF06657	NA	NA
UHGV-0153325_38	UniRef90	UniRef90_UPI001967CCF1	helix-turn-helix domain-containing protein	NA
UHGV-0153325_38	Structural annotation	PF04218, NF040595, COG1710	NA	NA
UHGV-0153325_40	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0153325_40	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0153325_40	UniRef90	UniRef90_A0A372V134	ATP-binding protein	NA
UHGV-0153325_40	eggNOG-mapper	552398.HMPREF0866_03135	AAA domain	NA
UHGV-0153325_40	Pfam	PF13401	AAA domain	AAA_22
UHGV-0153325_40	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0153325_40	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0153325_41	KOfam	K07497	K07497; putative transposase	NA
UHGV-0153325_41	PHROG	phrog_310	transposase	integration and excision
UHGV-0153325_41	UniRef90	UniRef90_A0A372V359	MerR family transcriptional regulator	NA
UHGV-0153325_41	eggNOG-mapper	552398.HMPREF0866_03136	Mu transposase, C-terminal	NA
UHGV-0153325_41	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0153325_41	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0153325_41	Pfam	PF00665	Integrase core domain	rve
UHGV-0153325_41	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0153325_41	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0153325_41	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0153325_47	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0153325_47	UniRef90	UniRef90_A0A372UYJ5	XRE family transcriptional regulator	NA
UHGV-0153325_47	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0153325_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0153325_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0153325_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153325_48	UniRef90	UniRef90_A0A396LL48	XRE family transcriptional regulator	NA
UHGV-0153325_48	eggNOG-mapper	665956.HMPREF1032_04076	Peptidase S24-like	NA
UHGV-0153325_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153325_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0153325_48	Structural annotation	PF01381, NF041951, COG1396	NA	NA