UHGV-0153350

Genome information

Genome length 49,985 bps

CDS count 83

Completeness 84.75% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153350
vOTU ID	vOTU-027587
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_487615
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.56
Jumbo phage	No

Genome content
Genome length	49,985 bps
GC content	38.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	83
CDS density	90.44%
Average CDS length	548.68 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153350_1	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0153350_2	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0153350_2	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-0153350_2	eggNOG-mapper	1200557.JHWV01000001_gene285	NA	NA
UHGV-0153350_2	Pfam	PF11753	NA	DUF3310
UHGV-0153350_2	Structural annotation	PF11753	NA	NA
UHGV-0153350_5	eggNOG-mapper	1397699.JNIS01000001_gene2447	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0153350_5	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-0153350_6	PHROG	phrog_14314	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153350_6	UniRef90	UniRef90_A0A8D9PGN5	HNH endonuclease	NA
UHGV-0153350_6	eggNOG-mapper	525378.HMPREF0793_1846	endonuclease activity	NA
UHGV-0153350_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0153350_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0153350_6	Structural annotation	PF01844	NA	NA
UHGV-0153350_7	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0153350_7	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0153350_9	UniRef90	UniRef90_A0A8D9PG44	Tax1-binding protein	NA
UHGV-0153350_14	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0153350_14	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0153350_14	UniRef90	UniRef90_A0A8D9PG28	tRNA-splicing ligase	NA
UHGV-0153350_14	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0153350_14	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0153350_14	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0153350_14	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0153350_15	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0153350_15	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0153350_15	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0153350_15	COG	COG5410	NA	NA
UHGV-0153350_15	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0153350_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0153350_16	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0153350_16	eggNOG-mapper	1123288.SOV_6c01520	sigma factor activity	NA
UHGV-0153350_16	Pfam	PF07374	NA	DUF1492
UHGV-0153350_16	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0153350_16	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0153350_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0153350_17	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0153350_17	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0153350_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0153350_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0153350_18	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0153350_18	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0153350_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0153350_18	COG	COG2369	NA	NA
UHGV-0153350_18	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0153350_20	PHROG	phrog_909	major head protein	head and packaging
UHGV-0153350_20	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0153350_20	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0153350_21	PHROG	phrog_29	major head protein	head and packaging
UHGV-0153350_21	UniRef90	UniRef90_A0A412RQU1	Major capsid protein	NA
UHGV-0153350_21	eggNOG-mapper	1296659.S5MNB6_9CAUD	Phage major capsid protein E	NA
UHGV-0153350_21	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0153350_21	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0153350_22	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0153350_22	Structural annotation	PF21169	NA	NA
UHGV-0153350_23	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0153350_24	PHROG	phrog_1863	NA	unknown function
UHGV-0153350_24	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0153350_25	PHROG	phrog_1129	holin	lysis
UHGV-0153350_25	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0153350_25	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0153350_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0153350_25	Structural annotation	PF06946	NA	NA
UHGV-0153350_26	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0153350_26	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0153350_27	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0153350_27	AcrCatalog	cluster_24841	NA	NA
UHGV-0153350_28	Structural annotation	PF05657	NA	NA
UHGV-0153350_29	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0153350_29	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0153350_32	KOfam	K07273	acm; lysozyme	NA
UHGV-0153350_32	PHROG	phrog_291	endolysin	lysis
UHGV-0153350_32	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0153350_32	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0153350_32	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0153350_32	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0153350_32	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0153350_33	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0153350_33	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0153350_33	COG	COG1511	NA	NA
UHGV-0153350_34	PHROG	phrog_1194	NA	unknown function
UHGV-0153350_34	eggNOG-mapper	997830.HMPREF1124_0608	NA	NA
UHGV-0153350_34	Pfam	PF20458	NA	DUF6711
UHGV-0153350_34	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0153350_35	PHROG	phrog_6616	tail protein	tail
UHGV-0153350_35	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0153350_35	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0153350_35	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0153350_35	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0153350_36	PHROG	phrog_1419	tail protein	tail
UHGV-0153350_36	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0153350_36	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0153350_38	PHROG	phrog_3845	NA	unknown function
UHGV-0153350_38	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-0153350_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0153350_39	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0153350_39	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0153350_39	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0153350_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153350_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0153350_39	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0153350_40	UniRef90	UniRef90_A0A412RQX5	XRE family transcriptional regulator	NA
UHGV-0153350_40	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0153350_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153350_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0153350_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0153350_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0153350_42	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0153350_42	UniRef90	UniRef90_UPI001BBFD8A7	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0153350_42	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0153350_42	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0153350_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0153350_42	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0153350_42	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0153350_43	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0153350_43	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0153350_46	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0153350_46	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153350_46	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0153350_46	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0153350_46	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0153350_46	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0153350_47	PHROG	phrog_2164	NA	unknown function
UHGV-0153350_49	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0153350_49	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0153350_49	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0153350_49	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0153350_49	Pfam	PF03837	RecT family	RecT
UHGV-0153350_49	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0153350_49	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0153350_49	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0153350_50	PHROG	phrog_25456	NA	unknown function
UHGV-0153350_52	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0153350_52	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0153350_52	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0153350_52	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0153350_52	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0153350_53	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0153350_53	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0153350_53	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0153350_53	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0153350_53	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0153350_55	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0153350_55	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0153350_55	UniRef90	UniRef90_UPI000E3FC2A8	single-stranded DNA-binding protein	NA
UHGV-0153350_55	eggNOG-mapper	500632.CLONEX_04019	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0153350_55	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153350_55	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0153350_55	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153350_55	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0153350_55	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0153350_56	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153350_56	UniRef90	UniRef90_A0A173RFZ3	NUMOD4 motif	NA
UHGV-0153350_56	eggNOG-mapper	476272.RUMHYD_03351	NUMOD4 motif	NA
UHGV-0153350_56	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0153350_56	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0153350_56	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0153350_56	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0153350_56	Structural annotation	PF07453	NA	NA
UHGV-0153350_58	Structural annotation	PF00041	NA	NA
UHGV-0153350_60	PHROG	phrog_19106	NA	unknown function
UHGV-0153350_60	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0153350_60	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0153350_60	Structural annotation	TIGR01453	NA	NA
UHGV-0153350_63	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0153350_63	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-0153350_63	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-0153350_63	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0153350_64	PHROG	phrog_9804	NA	unknown function
UHGV-0153350_64	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0153350_64	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0153350_64	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0153350_64	Structural annotation	PF11417	NA	NA
UHGV-0153350_69	PHROG	phrog_22292	NA	unknown function
UHGV-0153350_70	Structural annotation	PF19824	NA	NA
UHGV-0153350_71	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153350_71	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-0153350_71	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0153350_71	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0153350_71	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0153350_71	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0153350_73	UniRef90	UniRef90_UPI001D0694DF	NA	NA
UHGV-0153350_74	Structural annotation	COG4446	NA	NA
UHGV-0153350_75	PHROG	phrog_10714	NA	unknown function
UHGV-0153350_75	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0153350_75	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0153350_77	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0153350_77	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0153350_77	UniRef90	UniRef90_A0A1Q6KI63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0153350_77	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0153350_77	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0153350_77	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0153350_77	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0153350_77	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0153350_77	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0153350_79	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0153350_79	PHROG	phrog_17284	NA	unknown function
UHGV-0153350_79	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0153350_79	eggNOG-mapper	1300150.EMQU_2511	C-5 cytosine-specific DNA methylase	NA
UHGV-0153350_79	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0153350_79	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0153350_79	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0153350_80	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-0153350_82	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0153350_82	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0153350_82	eggNOG-mapper	411489.CLOL250_01459	Excisionase from transposon Tn916	NA
UHGV-0153350_82	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0153350_82	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0153350_82	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0153350_82	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0153350_83	KOfam	K14059	int; integrase	NA
UHGV-0153350_83	PHROG	phrog_1	integrase	integration and excision
UHGV-0153350_83	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-0153350_83	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-0153350_83	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0153350_83	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0153350_83	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153350_83	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0153350_83	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA