UHGV-0153377

Genome information

vOTU vOTU-019527

Genome length 39,972 bps

CDS count 58

Completeness 61.60% (medium-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153377
vOTU ID	vOTU-019527
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_455331
BioSample	SAMN05971677
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.2
Jumbo phage	No

Genome content
Genome length	39,972 bps
GC content	42.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	82.53%
Average CDS length	570.31 bps
tRNA count	6
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153377_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0153377_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0153377_1	UniRef90	UniRef90_UPI00046333B4	tyrosine-type recombinase/integrase	NA
UHGV-0153377_1	eggNOG-mapper	762984.HMPREF9445_01343	Belongs to the 'phage' integrase family	NA
UHGV-0153377_1	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0153377_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153377_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0153377_1	Structural annotation	PF00589, PF13495, MF_01808, NF001399, COG4974	NA	NA
UHGV-0153377_4	eggNOG-mapper	443144.GM21_0785	NA	NA
UHGV-0153377_5	PHROG	phrog_10415	NA	unknown function
UHGV-0153377_5	UniRef90	UniRef90_A0A1I0GLJ0	LPD29 domain-containing protein	NA
UHGV-0153377_5	eggNOG-mapper	500632.CLONEX_04013	DnaJ molecular chaperone homology domain	NA
UHGV-0153377_5	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0153377_5	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0153377_5	Structural annotation	PF18847	NA	NA
UHGV-0153377_8	AcrCatalog	cluster_11486	NA	NA
UHGV-0153377_9	UniRef90	UniRef90_UPI0018A9E325	helix-turn-helix domain-containing protein	NA
UHGV-0153377_9	eggNOG-mapper	397291.C804_01058	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0153377_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0153377_9	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0153377_10	UniRef90	UniRef90_UPI001D06401E	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0153377_10	eggNOG-mapper	1235799.C818_02374	mRNA binding	NA
UHGV-0153377_10	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0153377_10	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0153377_11	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0153377_11	PHROG	phrog_11958	NA	unknown function
UHGV-0153377_11	UniRef90	UniRef90_UPI00046769C7	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0153377_11	eggNOG-mapper	1235799.C818_02375	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0153377_11	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0153377_11	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0153377_11	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0153377_12	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0153377_16	PHROG	phrog_25176	NA	unknown function
UHGV-0153377_16	eggNOG-mapper	397290.C810_01476	NA	NA
UHGV-0153377_17	PHROG	phrog_2045	NA	unknown function
UHGV-0153377_17	UniRef90	UniRef90_UPI0004650E1C	NA	NA
UHGV-0153377_17	eggNOG-mapper	1235800.C819_00502	NA	NA
UHGV-0153377_17	Pfam	PF07505	NA	DUF5131
UHGV-0153377_17	COG	COG4422	NA	NA
UHGV-0153377_17	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-0153377_18	PHROG	phrog_30343	NA	unknown function
UHGV-0153377_18	UniRef90	UniRef90_A0A415ZYR4	N-acetyltransferase	NA
UHGV-0153377_18	eggNOG-mapper	641107.CDLVIII_1322	NA	NA
UHGV-0153377_18	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0153377_22	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0153377_22	PHROG	phrog_200	lipoprotein	other
UHGV-0153377_22	UniRef90	UniRef90_UPI001D07153E	prohibitin family protein	NA
UHGV-0153377_22	eggNOG-mapper	610130.Closa_0721	prohibitin homologues	NA
UHGV-0153377_22	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0153377_22	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0153377_22	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0153377_25	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0153377_25	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0153377_25	UniRef90	UniRef90_UPI000466EBF7	DNA adenine methylase	NA
UHGV-0153377_25	eggNOG-mapper	411902.CLOBOL_05671	COG COG0338 Site-specific DNA methylase	NA
UHGV-0153377_25	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0153377_25	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0153377_25	COG	COG0338	DNA-adenine methylase	NA
UHGV-0153377_25	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0153377_26	eggNOG-mapper	1298920.KI911353_gene2684	NA	NA
UHGV-0153377_27	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0153377_27	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0153377_29	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0153377_30	PHROG	phrog_10867	NA	unknown function
UHGV-0153377_30	eggNOG-mapper	1235802.C823_01032	NA	NA
UHGV-0153377_31	KOfam	K07392	PRS2; AAA family ATPase	NA
UHGV-0153377_31	PHROG	phrog_3757	NA	unknown function
UHGV-0153377_31	UniRef90	UniRef90_A0A174USY4	ATPase	NA
UHGV-0153377_31	eggNOG-mapper	1235802.C823_01035	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0153377_31	PADLOC	IetA_00002	NA	ietAS
UHGV-0153377_31	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0153377_31	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0153377_31	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-0153377_34	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0153377_34	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0153377_34	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0153377_34	COG	COG5410	NA	NA
UHGV-0153377_34	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0153377_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0153377_35	UniRef90	UniRef90_A0A3R6KGW8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0153377_35	eggNOG-mapper	1298920.KI911353_gene2680	NA	NA
UHGV-0153377_35	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0153377_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-0153377_38	UniRef90	UniRef90_UPI0004665F2D	phage portal protein	NA
UHGV-0153377_38	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0153377_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0153377_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0153377_39	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0153377_39	eggNOG-mapper	1298920.KI911353_gene2662	NA	NA
UHGV-0153377_39	Structural annotation	PF14265	NA	NA
UHGV-0153377_40	PHROG	phrog_909	major head protein	head and packaging
UHGV-0153377_40	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0153377_41	PHROG	phrog_29	major head protein	head and packaging
UHGV-0153377_41	UniRef90	UniRef90_UPI0004664AB1	major capsid protein	NA
UHGV-0153377_41	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0153377_41	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0153377_41	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0153377_42	UniRef90	UniRef90_UPI000836E88E	phage head-tail connector protein	NA
UHGV-0153377_42	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0153377_42	Structural annotation	TIGR01560	NA	NA
UHGV-0153377_43	PHROG	phrog_872	NA	unknown function
UHGV-0153377_43	UniRef90	UniRef90_UPI001D071048	NA	NA
UHGV-0153377_43	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0153377_43	Pfam	PF14359	NA	DUF4406
UHGV-0153377_43	Pfam	PF11195	NA	DUF2829
UHGV-0153377_43	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0153377_43	Structural annotation	PF11195, PF14359, COG3613	NA	NA
UHGV-0153377_44	PHROG	phrog_26391	NA	unknown function
UHGV-0153377_44	eggNOG-mapper	1122197.ATWI01000014_gene8	NA	NA
UHGV-0153377_45	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0153377_45	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0153377_46	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0153377_46	AcrCatalog	cluster_24841	NA	NA
UHGV-0153377_47	Structural annotation	PF05657	NA	NA
UHGV-0153377_48	PHROG	phrog_158	major tail protein	tail
UHGV-0153377_48	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-0153377_48	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0153377_49	PHROG	phrog_36112	NA	unknown function
UHGV-0153377_49	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0153377_49	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0153377_51	PHROG	phrog_3675	NA	unknown function
UHGV-0153377_51	UniRef90	UniRef90_UPI001D08FCA4	YjcQ family protein	NA
UHGV-0153377_51	eggNOG-mapper	397290.C810_01422	YjcQ protein	NA
UHGV-0153377_51	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0153377_51	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0153377_52	PHROG	phrog_28918	NA	unknown function
UHGV-0153377_52	UniRef90	UniRef90_A0A1I0JNI7	Phage-related protein	NA
UHGV-0153377_52	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0153377_52	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0153377_53	UniRef90	UniRef90_UPI001D091E10	zinc ribbon domain-containing protein	NA
UHGV-0153377_53	eggNOG-mapper	411490.ANACAC_00818	Belongs to the 'phage' integrase family	NA
UHGV-0153377_53	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0153377_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0153377_53	Structural annotation	PF17292	NA	NA
UHGV-0153377_56	PHROG	phrog_1194	NA	unknown function
UHGV-0153377_56	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0153377_56	Pfam	PF20458	NA	DUF6711
UHGV-0153377_56	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0153377_57	PHROG	phrog_18190	NA	unknown function
UHGV-0153377_57	UniRef90	UniRef90_UPI001D07E8AF	tail fiber domain-containing protein	NA
UHGV-0153377_57	eggNOG-mapper	1298920.KI911353_gene2679	NA	NA