UHGV-0153446

Genome information

Genome length 44,132 bps

CDS count 69

Completeness 74.79% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153446
vOTU ID	vOTU-027593
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_492280
BioSample	SAMN06110128
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.04
Jumbo phage	No

Genome content
Genome length	44,132 bps
GC content	39.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	91.41%
Average CDS length	588.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153446_1	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0153446_1	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0153446_1	UniRef90	UniRef90_A0A8D9PG28	tRNA-splicing ligase	NA
UHGV-0153446_1	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0153446_1	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0153446_1	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0153446_1	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0153446_2	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0153446_2	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-0153446_2	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0153446_2	COG	COG5410	NA	NA
UHGV-0153446_2	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0153446_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0153446_3	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0153446_3	eggNOG-mapper	1123288.SOV_6c01520	sigma factor activity	NA
UHGV-0153446_3	Pfam	PF07374	NA	DUF1492
UHGV-0153446_3	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0153446_3	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0153446_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-0153446_4	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0153446_4	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0153446_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0153446_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0153446_5	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0153446_5	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0153446_5	eggNOG-mapper	1207076.ALAT01000105_gene1902	head morphogenesis protein, SPP1	NA
UHGV-0153446_5	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0153446_5	COG	COG2369	NA	NA
UHGV-0153446_5	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0153446_7	PHROG	phrog_909	major head protein	head and packaging
UHGV-0153446_7	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0153446_8	PHROG	phrog_29	major head protein	head and packaging
UHGV-0153446_8	UniRef90	UniRef90_A0A412RQU1	Major capsid protein	NA
UHGV-0153446_8	eggNOG-mapper	1296659.S5MNB6_9CAUD	Phage major capsid protein E	NA
UHGV-0153446_8	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0153446_8	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0153446_9	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0153446_9	Structural annotation	PF21169	NA	NA
UHGV-0153446_10	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0153446_11	PHROG	phrog_4105	NA	unknown function
UHGV-0153446_11	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0153446_12	PHROG	phrog_1129	holin	lysis
UHGV-0153446_12	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-0153446_12	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0153446_12	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0153446_12	Structural annotation	PF06946	NA	NA
UHGV-0153446_13	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0153446_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0153446_14	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0153446_14	AcrCatalog	cluster_24841	NA	NA
UHGV-0153446_15	Structural annotation	PF05657	NA	NA
UHGV-0153446_16	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0153446_16	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0153446_19	KOfam	K07273	acm; lysozyme	NA
UHGV-0153446_19	PHROG	phrog_291	endolysin	lysis
UHGV-0153446_19	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0153446_19	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0153446_19	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0153446_19	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0153446_19	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0153446_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0153446_20	UniRef90	UniRef90_A0A1I0JNI7	Phage-related protein	NA
UHGV-0153446_20	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0153446_20	COG	COG1511	NA	NA
UHGV-0153446_21	PHROG	phrog_1194	NA	unknown function
UHGV-0153446_21	eggNOG-mapper	86416.Clopa_0588	NA	NA
UHGV-0153446_21	Pfam	PF20458	NA	DUF6711
UHGV-0153446_21	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0153446_22	PHROG	phrog_6616	tail protein	tail
UHGV-0153446_22	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0153446_22	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0153446_22	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0153446_22	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0153446_23	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0153446_24	PHROG	phrog_5302	tail protein	tail
UHGV-0153446_24	UniRef90	UniRef90_A0A345BPB9	Lectin	NA
UHGV-0153446_24	eggNOG-mapper	665956.HMPREF1032_00690	NA	NA
UHGV-0153446_24	Structural annotation	COG1262	NA	NA
UHGV-0153446_25	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0153446_25	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0153446_25	UniRef90	UniRef90_A0A1M7SMD9	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0153446_25	eggNOG-mapper	665956.HMPREF1032_00691	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0153446_25	PADLOC	drt-UG17	DRT	DRT
UHGV-0153446_25	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0153446_25	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0153446_25	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0153446_26	PHROG	phrog_20201	NA	unknown function
UHGV-0153446_27	UniRef90	UniRef90_A0A349YRM6	XkdX family protein	NA
UHGV-0153446_27	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0153446_27	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0153446_27	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0153446_28	PHROG	phrog_806	NA	unknown function
UHGV-0153446_28	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0153446_28	Pfam	PF11611	NA	DUF4352
UHGV-0153446_28	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0153446_30	PHROG	phrog_3845	NA	unknown function
UHGV-0153446_30	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-0153446_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0153446_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153446_31	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0153446_31	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0153446_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153446_31	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0153446_31	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0153446_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153446_32	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-0153446_32	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0153446_32	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0153446_32	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0153446_32	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0153446_33	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0153446_33	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0153446_33	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0153446_33	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0153446_33	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0153446_33	COG	COG3617	Prophage antirepressor	NA
UHGV-0153446_33	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0153446_34	UniRef90	UniRef90_A0A1L8RDA1	LysM domain-containing protein	NA
UHGV-0153446_34	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0153446_34	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0153446_37	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0153446_37	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153446_37	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0153446_37	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0153446_37	Pfam	PF13476	AAA domain	AAA_23
UHGV-0153446_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0153446_37	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0153446_40	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0153446_40	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-0153446_40	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0153446_40	Pfam	PF03837	RecT family	RecT
UHGV-0153446_40	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0153446_40	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0153446_40	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0153446_41	PHROG	phrog_25456	NA	unknown function
UHGV-0153446_43	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0153446_43	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0153446_43	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0153446_43	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0153446_43	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0153446_44	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0153446_44	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0153446_44	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0153446_44	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0153446_44	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0153446_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0153446_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0153446_46	UniRef90	UniRef90_UPI000E3FC2A8	single-stranded DNA-binding protein	NA
UHGV-0153446_46	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0153446_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153446_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0153446_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153446_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0153446_46	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0153446_48	PHROG	phrog_19106	NA	unknown function
UHGV-0153446_48	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0153446_48	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0153446_48	Structural annotation	TIGR01453	NA	NA
UHGV-0153446_49	PHROG	phrog_20593	NA	unknown function
UHGV-0153446_50	PHROG	phrog_19106	NA	unknown function
UHGV-0153446_50	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0153446_50	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0153446_50	Structural annotation	TIGR01453	NA	NA
UHGV-0153446_54	Structural annotation	PF17388	NA	NA
UHGV-0153446_55	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0153446_55	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-0153446_55	eggNOG-mapper	1196322.A370_02071	DnaD domain protein	NA
UHGV-0153446_55	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0153446_56	PHROG	phrog_9804	NA	unknown function
UHGV-0153446_56	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0153446_56	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0153446_56	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0153446_56	Structural annotation	PF11417	NA	NA
UHGV-0153446_61	PHROG	phrog_22292	NA	unknown function
UHGV-0153446_65	PHROG	phrog_874	NA	unknown function
UHGV-0153446_65	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0153446_65	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0153446_65	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0153446_66	PHROG	phrog_8684	NA	unknown function
UHGV-0153446_66	UniRef90	UniRef90_A0A173RDP8	YopX protein	NA
UHGV-0153446_66	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0153446_66	Pfam	PF09643	YopX protein	YopX
UHGV-0153446_66	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0153446_66	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0153446_68	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0153446_68	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0153446_68	eggNOG-mapper	1121296.JONJ01000009_gene671	Excisionase from transposon Tn916	NA
UHGV-0153446_68	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0153446_68	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0153446_68	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0153446_68	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0153446_69	KOfam	K14059	int; integrase	NA
UHGV-0153446_69	PHROG	phrog_1	integrase	integration and excision
UHGV-0153446_69	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-0153446_69	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-0153446_69	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0153446_69	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0153446_69	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153446_69	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0153446_69	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA