UHGV-0153525

Genome information

vOTU vOTU-022044

Genome length 36,041 bps

CDS count 66

Completeness 84.68% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153525
vOTU ID	vOTU-022044
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_485425
BioSample	SAMN06110082
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.1
Jumbo phage	No

Genome content
Genome length	36,041 bps
GC content	54.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	93.19%
Average CDS length	511.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153525_1	PHROG	phrog_27197	NA	unknown function
UHGV-0153525_1	eggNOG-mapper	767434.Fraau_1460	regulation of DNA-templated transcription, elongation	NA
UHGV-0153525_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0153525_2	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0153525_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0153525_2	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0153525_4	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0153525_4	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0153525_4	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0153525_4	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0153525_4	Structural annotation	PF05565	NA	NA
UHGV-0153525_5	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153525_5	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0153525_5	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0153525_5	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0153525_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0153525_6	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0153525_6	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0153525_6	Structural annotation	PF05772	NA	NA
UHGV-0153525_8	PHROG	phrog_7566	NA	unknown function
UHGV-0153525_8	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0153525_8	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0153525_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0153525_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0153525_9	UniRef90	UniRef90_UPI001958E09C	single-stranded DNA-binding protein	NA
UHGV-0153525_9	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0153525_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153525_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0153525_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153525_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0153525_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0153525_10	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153525_10	UniRef90	UniRef90_A0A1I3BJ26	NUMOD4 motif-containing protein	NA
UHGV-0153525_10	eggNOG-mapper	945021.TEH_18310	NUMOD4 motif	NA
UHGV-0153525_10	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0153525_10	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0153525_10	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0153525_10	Structural annotation	PF13392, PF20987	NA	NA
UHGV-0153525_12	PHROG	phrog_15768	NA	unknown function
UHGV-0153525_12	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0153525_12	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0153525_12	Pfam	PF19808	NA	DUF6291
UHGV-0153525_12	Structural annotation	PF19808	NA	NA
UHGV-0153525_14	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0153525_14	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0153525_14	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-0153525_14	Pfam	PF06356	NA	DUF1064
UHGV-0153525_14	Structural annotation	PF06356	NA	NA
UHGV-0153525_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0153525_16	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0153525_16	UniRef90	UniRef90_A0A8D9PDD1	DNA (Cytosine 5) methyltransferase	NA
UHGV-0153525_16	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0153525_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0153525_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0153525_16	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0153525_18	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0153525_19	PHROG	phrog_1374	NA	unknown function
UHGV-0153525_19	UniRef90	UniRef90_A0A2I6PFH1	Putative membrane protein	NA
UHGV-0153525_19	eggNOG-mapper	1519439.JPJG01000059_gene1913	NA	NA
UHGV-0153525_19	Structural annotation	TIGR04438	NA	NA
UHGV-0153525_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0153525_22	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0153525_25	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0153525_26	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0153525_27	UniRef90	UniRef90_A0A8D9PDT2	Brinker DNA-binding domain protein	NA
UHGV-0153525_27	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0153525_27	Pfam	PF10832	YhfG	YhfG
UHGV-0153525_27	Structural annotation	PF13542	NA	NA
UHGV-0153525_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0153525_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0153525_28	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0153525_28	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0153525_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0153525_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0153525_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0153525_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0153525_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0153525_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0153525_29	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0153525_29	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0153525_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0153525_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0153525_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0153525_32	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0153525_32	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0153525_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0153525_32	COG	COG2369	NA	NA
UHGV-0153525_32	Structural annotation	PF06152	NA	NA
UHGV-0153525_33	Structural annotation	PF18152	NA	NA
UHGV-0153525_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0153525_34	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0153525_34	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0153525_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0153525_34	Structural annotation	PF06810	NA	NA
UHGV-0153525_35	PHROG	phrog_212	major head protein	head and packaging
UHGV-0153525_35	UniRef90	UniRef90_A0A2V2FIN1	Phage capsid protein	NA
UHGV-0153525_35	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0153525_35	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0153525_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0153525_36	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0153525_37	PHROG	phrog_3366	NA	unknown function
UHGV-0153525_37	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0153525_37	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0153525_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0153525_38	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0153525_38	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0153525_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0153525_38	Structural annotation	PF11114	NA	NA
UHGV-0153525_39	PHROG	phrog_3266	tail completion	connector
UHGV-0153525_39	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0153525_39	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0153525_39	Structural annotation	PF12691	NA	NA
UHGV-0153525_40	PHROG	phrog_3099	NA	unknown function
UHGV-0153525_40	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0153525_40	Structural annotation	TIGR02126	NA	NA
UHGV-0153525_41	PHROG	phrog_11299	NA	unknown function
UHGV-0153525_41	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0153525_41	Structural annotation	PF10666	NA	NA
UHGV-0153525_42	PHROG	phrog_706	NA	unknown function
UHGV-0153525_42	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0153525_42	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0153525_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0153525_42	Structural annotation	PF06854	NA	NA
UHGV-0153525_43	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0153525_43	PHROG	phrog_19856	NA	unknown function
UHGV-0153525_43	UniRef90	UniRef90_A0A417P7U8	Restriction endonuclease	NA
UHGV-0153525_43	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0153525_43	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0153525_43	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0153525_43	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0153525_43	Structural annotation	PF04471, MF_00584, NF040854, COG1787	NA	NA
UHGV-0153525_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0153525_44	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0153525_44	COG	COG1511	NA	NA
UHGV-0153525_44	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0153525_45	PHROG	phrog_1194	NA	unknown function
UHGV-0153525_45	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0153525_45	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0153525_46	PHROG	phrog_13879	NA	unknown function
UHGV-0153525_46	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0153525_46	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0153525_48	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0153525_48	PHROG	phrog_11157	NA	unknown function
UHGV-0153525_48	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0153525_48	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0153525_48	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0153525_48	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0153525_48	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0153525_48	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0153525_49	PHROG	phrog_18725	NA	unknown function
UHGV-0153525_49	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0153525_49	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0153525_49	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0153525_51	PHROG	phrog_2295	NA	unknown function
UHGV-0153525_51	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0153525_51	Structural annotation	PF21722	NA	NA
UHGV-0153525_52	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0153525_52	Structural annotation	PF21722	NA	NA
UHGV-0153525_54	PHROG	phrog_2310	NA	unknown function
UHGV-0153525_54	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0153525_56	PHROG	phrog_4105	NA	unknown function
UHGV-0153525_56	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0153525_56	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0153525_57	PHROG	phrog_881	holin	lysis
UHGV-0153525_57	UniRef90	UniRef90_A0A133N4A6	Holin family protein	NA
UHGV-0153525_57	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0153525_57	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0153525_57	Structural annotation	PF16938	NA	NA
UHGV-0153525_58	PHROG	phrog_9589	endolysin	lysis
UHGV-0153525_58	UniRef90	UniRef90_A0A8D9PDX2	MurNAc-LAA protein	NA
UHGV-0153525_58	eggNOG-mapper	552398.HMPREF0866_03091	CHAP domain	NA
UHGV-0153525_58	Pfam	PF05257	CHAP domain	CHAP
UHGV-0153525_58	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0153525_58	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0153525_58	Structural annotation	PF01520, PF01471, TIGR02883, COG0860	NA	NA
UHGV-0153525_60	PHROG	phrog_3754	NA	unknown function
UHGV-0153525_60	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0153525_61	PHROG	phrog_21718	NA	unknown function
UHGV-0153525_61	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0153525_62	PHROG	phrog_22984	NA	unknown function
UHGV-0153525_63	PHROG	phrog_16490	NA	unknown function
UHGV-0153525_63	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0153525_64	PHROG	phrog_20016	NA	unknown function
UHGV-0153525_64	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0153525_64	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0153525_64	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0153525_65	PHROG	phrog_28802	NA	unknown function
UHGV-0153525_65	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0153525_65	Structural annotation	PF12510	NA	NA
UHGV-0153525_66	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA