UHGV-0153561

Genome information

Genome length 39,031 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153561
vOTU ID	vOTU-010588
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_483454
BioSample	SAMN06115488
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.54
Jumbo phage	No

Genome content
Genome length	39,031 bps
GC content	59.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.57%
Average CDS length	684.74 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153561_1	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0153561_1	eggNOG-mapper	1688.BCUN_0619	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0153561_1	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0153561_2	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153561_2	UniRef90	UniRef90_A0A1C6FFC2	HNH domain-containing protein	NA
UHGV-0153561_2	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-0153561_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0153561_3	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0153561_3	UniRef90	UniRef90_A0A0G3WGQ0	Phage terminase, small subunit	NA
UHGV-0153561_3	eggNOG-mapper	926561.KB900623_gene765	NA	NA
UHGV-0153561_3	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0153561_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0153561_4	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-0153561_4	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0153561_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0153561_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0153561_4	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0153561_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0153561_5	UniRef90	UniRef90_A0A328UFT7	Phage portal protein	NA
UHGV-0153561_5	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0153561_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0153561_5	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0153561_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0153561_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0153561_6	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0153561_6	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0153561_6	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0153561_6	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0153561_6	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0153561_6	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0153561_6	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0153561_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0153561_7	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0153561_7	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0153561_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0153561_7	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0153561_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0153561_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0153561_7	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0153561_8	PHROG	phrog_749	NA	unknown function
UHGV-0153561_8	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0153561_9	PHROG	phrog_19734	NA	unknown function
UHGV-0153561_9	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0153561_9	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0153561_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0153561_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0153561_10	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0153561_10	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0153561_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0153561_11	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0153561_11	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0153561_11	Structural annotation	TIGR01725	NA	NA
UHGV-0153561_12	PHROG	phrog_88	major tail protein	tail
UHGV-0153561_12	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0153561_12	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0153561_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0153561_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0153561_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0153561_14	UniRef90	UniRef90_UPI001F18B975	phage tail tape measure protein	NA
UHGV-0153561_14	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0153561_14	COG	COG5412	Phage-related protein	NA
UHGV-0153561_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0153561_15	UniRef90	UniRef90_A0A8J6IR89	Phage tail family protein	NA
UHGV-0153561_15	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-0153561_15	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0153561_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0153561_15	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0153561_16	PHROG	phrog_538	minor tail protein	tail
UHGV-0153561_16	UniRef90	UniRef90_A0A8J6IQQ3	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0153561_16	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0153561_16	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0153561_16	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0153561_17	PHROG	phrog_9534	head protein	head and packaging
UHGV-0153561_17	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-0153561_17	Structural annotation	PF21567	NA	NA
UHGV-0153561_20	KOfam	K07273	acm; lysozyme	NA
UHGV-0153561_20	PHROG	phrog_291	endolysin	lysis
UHGV-0153561_20	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0153561_20	eggNOG-mapper	877424.ATWC01000009_gene1193	Glycosyl hydrolases family 25	NA
UHGV-0153561_20	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0153561_20	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0153561_20	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0153561_20	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0153561_21	PHROG	phrog_4105	NA	unknown function
UHGV-0153561_21	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0153561_22	PHROG	phrog_1129	holin	lysis
UHGV-0153561_22	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0153561_22	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0153561_22	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0153561_22	Structural annotation	PF16079	NA	NA
UHGV-0153561_23	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0153561_23	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0153561_24	eggNOG-mapper	78345.BMERY_0692	NA	NA
UHGV-0153561_24	Structural annotation	PF07825, NF040990, COG3311	NA	NA
UHGV-0153561_27	PHROG	phrog_16490	NA	unknown function
UHGV-0153561_27	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0153561_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0153561_29	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0153561_30	KOfam	K14059	int; integrase	NA
UHGV-0153561_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0153561_30	UniRef90	UniRef90_UPI00195B6EEA	site-specific integrase	NA
UHGV-0153561_30	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0153561_30	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0153561_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153561_30	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0153561_30	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0153561_31	eggNOG-mapper	1280682.AUKA01000018_gene2337	NA	NA
UHGV-0153561_32	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0153561_32	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0153561_32	UniRef90	UniRef90_A0A1G8QZ98	DNA polymerase-3 subunit epsilon	NA
UHGV-0153561_32	eggNOG-mapper	1410668.JNKC01000008_gene2741	EXOIII	NA
UHGV-0153561_32	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0153561_32	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0153561_32	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0153561_32	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0153561_34	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0153561_34	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0153561_34	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0153561_34	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0153561_34	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0153561_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0153561_34	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0153561_38	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0153561_38	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0153561_41	PHROG	phrog_10280	NA	unknown function
UHGV-0153561_41	eggNOG-mapper	903814.ELI_0195	NA	NA
UHGV-0153561_42	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0153561_42	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0153561_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0153561_43	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0153561_43	Pfam	PF05772	NinB protein	NinB
UHGV-0153561_43	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0153561_44	PHROG	phrog_7566	NA	unknown function
UHGV-0153561_44	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0153561_45	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0153561_45	UniRef90	UniRef90_UPI001165C3F9	replication terminator protein	NA
UHGV-0153561_45	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0153561_46	PHROG	phrog_1029	NA	unknown function
UHGV-0153561_46	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0153561_46	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0153561_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0153561_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0153561_47	UniRef90	UniRef90_A0A1Q6T3F1	Single-stranded DNA-binding protein	NA
UHGV-0153561_47	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0153561_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153561_47	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0153561_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153561_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0153561_47	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0153561_48	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0153561_48	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-0153561_48	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0153561_48	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0153561_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0153561_48	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0153561_49	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0153561_49	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0153561_49	UniRef90	UniRef90_A0A1Q6T363	DNA helicase	NA
UHGV-0153561_49	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0153561_49	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0153561_49	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0153561_49	COG	COG0305	Replicative DNA helicase	NA
UHGV-0153561_49	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0153561_50	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0153561_50	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0153561_50	UniRef90	UniRef90_A0A6N8H6J9	ParA family protein	NA
UHGV-0153561_50	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0153561_50	Pfam	PF13614	AAA domain	AAA_31
UHGV-0153561_50	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0153561_50	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0153561_51	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0153561_51	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0153561_51	UniRef90	UniRef90_A0A1Q6T350	ParB domain-containing protein	NA
UHGV-0153561_51	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0153561_51	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0153561_51	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0153561_51	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0153561_52	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0153561_52	UniRef90	UniRef90_A0A353BRJ1	Sigma70_r4 domain-containing protein	NA
UHGV-0153561_52	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0153561_52	Structural annotation	PF04545, NF033634	NA	NA
UHGV-0153561_53	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0153561_53	UniRef90	UniRef90_UPI00164C574E	DNA adenine methylase	NA
UHGV-0153561_53	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0153561_53	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12