UHGV-0153691

Genome information

Genome length 46,439 bps

CDS count 71

Completeness 57.63% (medium-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153691
vOTU ID	vOTU-027602
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_490358
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	0
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.01
Jumbo phage	No

Genome content
Genome length	46,439 bps
GC content	38.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	89.16%
Average CDS length	586.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153691_3	PHROG	phrog_8684	NA	unknown function
UHGV-0153691_3	UniRef90	UniRef90_A0A1C6K9I9	YopX protein	NA
UHGV-0153691_3	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0153691_3	Pfam	PF09643	YopX protein	YopX
UHGV-0153691_3	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0153691_3	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0153691_4	PHROG	phrog_15198	NA	unknown function
UHGV-0153691_4	UniRef90	UniRef90_A0A2V2D7Q1	NA	NA
UHGV-0153691_4	Pfam	PF04448	NA	DUF551
UHGV-0153691_4	Structural annotation	NF041588	NA	NA
UHGV-0153691_5	PHROG	phrog_419	NA	unknown function
UHGV-0153691_5	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-0153691_5	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0153691_7	Structural annotation	NF041197	NA	NA
UHGV-0153691_10	UniRef90	UniRef90_A0A412EKY9	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0153691_10	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0153691_10	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0153691_10	Structural annotation	PF09202, MF_00732, NF008273, COG3388	NA	NA
UHGV-0153691_11	UniRef90	UniRef90_UPI0009C032EA	helix-turn-helix domain-containing protein	NA
UHGV-0153691_11	eggNOG-mapper	476272.RUMHYD_03349	NA	NA
UHGV-0153691_12	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0153691_12	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0153691_12	UniRef90	UniRef90_A0A373NSG0	Methyltransferase	NA
UHGV-0153691_12	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0153691_12	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0153691_12	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0153691_12	COG	COG0863	DNA modification methylase	NA
UHGV-0153691_12	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0153691_13	PHROG	phrog_19106	NA	unknown function
UHGV-0153691_13	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0153691_13	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0153691_13	Structural annotation	TIGR01453	NA	NA
UHGV-0153691_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0153691_14	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0153691_14	UniRef90	UniRef90_A0A1C6HZJ5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0153691_14	eggNOG-mapper	1235798.C817_04105	C-5 cytosine-specific DNA methylase	NA
UHGV-0153691_14	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0153691_14	Pfam	PF13403	Hint domain	Hint_2
UHGV-0153691_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0153691_14	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0153691_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0153691_14	Structural annotation	PF05203, PF00145, MF_01420, NF011287, TIGR00675, COG1372, COG0270	NA	NA
UHGV-0153691_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0153691_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0153691_15	UniRef90	UniRef90_A0A373NQD5	Single-stranded DNA-binding protein	NA
UHGV-0153691_15	eggNOG-mapper	411474.COPEUT_01783	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0153691_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153691_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0153691_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153691_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0153691_15	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0153691_21	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0153691_21	UniRef90	UniRef90_A0A373NR15	MBL fold metallo-hydrolase	NA
UHGV-0153691_21	eggNOG-mapper	476272.RUMHYD_03342	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0153691_21	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0153691_21	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0153691_22	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0153691_22	UniRef90	UniRef90_A0A412SAY1	MBL fold metallo-hydrolase	NA
UHGV-0153691_22	eggNOG-mapper	1118057.CAGX01000058_gene97	Beta-lactamase superfamily domain	NA
UHGV-0153691_22	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0153691_22	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0153691_24	PHROG	phrog_25456	NA	unknown function
UHGV-0153691_25	PHROG	phrog_2316	NA	unknown function
UHGV-0153691_25	UniRef90	UniRef90_UPI0005976259	NA	NA
UHGV-0153691_25	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0153691_25	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0153691_27	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0153691_27	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0153691_27	UniRef90	UniRef90_A0A373NRM0	Recombinase RecT	NA
UHGV-0153691_27	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0153691_27	Pfam	PF03837	RecT family	RecT
UHGV-0153691_27	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0153691_27	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0153691_27	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0153691_28	Structural annotation	TIGR02582, COG1604	NA	NA
UHGV-0153691_30	PHROG	phrog_15946	NA	unknown function
UHGV-0153691_30	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0153691_31	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0153691_31	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153691_31	UniRef90	UniRef90_A0A373NR21	AAA_23 domain-containing protein	NA
UHGV-0153691_31	eggNOG-mapper	476272.RUMHYD_03317	nuclear chromosome segregation	NA
UHGV-0153691_31	Pfam	PF13476	AAA domain	AAA_23
UHGV-0153691_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0153691_31	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0153691_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0153691_32	PHROG	phrog_26861	NA	unknown function
UHGV-0153691_32	UniRef90	UniRef90_A0A373NQB7	Single-stranded DNA-binding protein	NA
UHGV-0153691_32	eggNOG-mapper	1235790.C805_03806	NA	NA
UHGV-0153691_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153691_32	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0153691_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153691_32	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0153691_33	PHROG	phrog_26861	NA	unknown function
UHGV-0153691_33	UniRef90	UniRef90_UPI001F33AC1F	single-stranded DNA-binding protein	NA
UHGV-0153691_33	eggNOG-mapper	1151292.QEW_3881	Single-strand binding protein family	NA
UHGV-0153691_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153691_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153691_33	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0153691_36	UniRef90	UniRef90_A0A1Y4F3A4	50S ribosomal protein L29	NA
UHGV-0153691_39	Structural annotation	PF20037, COG3212	NA	NA
UHGV-0153691_40	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0153691_40	UniRef90	UniRef90_A0A1C5RZZ2	Phage anti-repressor protein	NA
UHGV-0153691_40	eggNOG-mapper	1347368.HG964404_gene4981	ORF6N domain	NA
UHGV-0153691_40	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0153691_40	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0153691_40	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0153691_40	Structural annotation	PF10552, PF10543, TIGR02681, COG3646	NA	NA
UHGV-0153691_43	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0153691_43	UniRef90	UniRef90_A0A374DQW9	Transcriptional regulator	NA
UHGV-0153691_43	eggNOG-mapper	411459.RUMOBE_01391	NA	NA
UHGV-0153691_43	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0153691_43	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0153691_43	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0153691_44	Structural annotation	PF12729	NA	NA
UHGV-0153691_46	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0153691_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153691_46	UniRef90	UniRef90_A0A416RWS4	XRE family transcriptional regulator	NA
UHGV-0153691_46	eggNOG-mapper	397290.C810_01441	Helix-turn-helix XRE-family like proteins	NA
UHGV-0153691_46	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0153691_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0153691_46	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0153691_49	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0153691_49	PHROG	phrog_8810	NA	unknown function
UHGV-0153691_49	UniRef90	UniRef90_A0A373NRE0	Stage 0 sporulation protein A homolog	NA
UHGV-0153691_49	eggNOG-mapper	742740.HMPREF9474_03223	LytTr DNA-binding domain	NA
UHGV-0153691_49	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0153691_49	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0153691_49	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0153691_49	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0153691_50	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0153691_50	PHROG	phrog_3088	amidase	lysis
UHGV-0153691_50	UniRef90	UniRef90_A0A173WJQ4	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-0153691_50	eggNOG-mapper	478749.BRYFOR_07564	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0153691_50	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0153691_50	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0153691_50	COG	COG3087	Cell division protein FtsN	NA
UHGV-0153691_50	Structural annotation	PF01510, PF08230, NF008758, COG5632	NA	NA
UHGV-0153691_51	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0153691_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0153691_51	UniRef90	UniRef90_A0A417CA24	Integrase	NA
UHGV-0153691_51	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0153691_51	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0153691_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153691_51	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0153691_51	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0153691_53	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-0153691_53	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-0153691_53	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0153691_53	Structural annotation	PF17065, NF038127	NA	NA
UHGV-0153691_54	PHROG	phrog_18444	NA	unknown function
UHGV-0153691_54	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0153691_54	eggNOG-mapper	545243.BAEV01000153_gene380	NA	NA
UHGV-0153691_55	PHROG	phrog_6616	tail protein	tail
UHGV-0153691_55	UniRef90	UniRef90_R5QUN9	Peptidase S74 domain-containing protein	NA
UHGV-0153691_55	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0153691_55	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-0153691_56	PHROG	phrog_1194	NA	unknown function
UHGV-0153691_56	eggNOG-mapper	1117108.PAALTS15_13512	NA	NA
UHGV-0153691_56	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0153691_58	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0153691_58	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153691_58	UniRef90	UniRef90_A0A373NQW5	HNH endonuclease	NA
UHGV-0153691_58	eggNOG-mapper	97139.C824_02826	HNH endonuclease	NA
UHGV-0153691_58	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0153691_58	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0153691_58	Structural annotation	PF14279	NA	NA
UHGV-0153691_60	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0153691_60	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0153691_60	UniRef90	UniRef90_UPI00156F56E8	ORF6C domain-containing protein	NA
UHGV-0153691_60	eggNOG-mapper	658655.HMPREF0988_02543	Phage regulatory protein	NA
UHGV-0153691_60	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0153691_60	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0153691_60	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0153691_60	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0153691_61	UniRef90	UniRef90_A0A1C5WHU9	Ribbon-helix-helix protein, copG family	NA
UHGV-0153691_61	eggNOG-mapper	1378168.N510_02331	Ribbon-helix-helix protein, copG family	NA
UHGV-0153691_61	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0153691_62	Structural annotation	PF19818, TIGR03931	NA	NA
UHGV-0153691_63	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0153691_63	eggNOG-mapper	1410624.JNKK01000014_gene1631	Bacterial Ig-like domain (group 2)	NA
UHGV-0153691_63	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0153691_63	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-0153691_63	Structural annotation	PF02368, PF11906, NF005261	NA	NA
UHGV-0153691_64	eggNOG-mapper	1235793.C809_00537	NA	NA
UHGV-0153691_65	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0153691_66	PHROG	phrog_2316	NA	unknown function
UHGV-0153691_66	UniRef90	UniRef90_A0A373NQV5	NA	NA
UHGV-0153691_66	eggNOG-mapper	1280698.AUJS01000007_gene1022	NA	NA
UHGV-0153691_66	Pfam	PF16475	NA	DUF5052
UHGV-0153691_66	Structural annotation	PF16475	NA	NA
UHGV-0153691_67	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0153691_67	UniRef90	UniRef90_UPI001020B14A	DnaD domain protein	NA
UHGV-0153691_67	eggNOG-mapper	1121422.AUMW01000049_gene1257	Transcriptional regulator	NA
UHGV-0153691_67	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0153691_67	Structural annotation	PF05584, NF000243, COG0640	NA	NA
UHGV-0153691_68	eggNOG-mapper	658088.HMPREF0987_01134	NA	NA
UHGV-0153691_68	Structural annotation	PF21076, NF002066	NA	NA
UHGV-0153691_69	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0153691_69	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0153691_69	UniRef90	UniRef90_UPI001A9A4A96	antA/AntB antirepressor family protein	NA
UHGV-0153691_69	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-0153691_69	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0153691_69	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0153691_69	Structural annotation	PF09669, NF008573, COG3561	NA	NA
UHGV-0153691_70	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0153691_70	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0153691_70	UniRef90	UniRef90_A0A396ABH4	Group II intron reverse transcriptase/maturase	NA
UHGV-0153691_70	eggNOG-mapper	658655.HMPREF0988_02511	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0153691_70	PADLOC	PtuC2_00004	Reverse transcriptase	Septu
UHGV-0153691_70	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0153691_70	Pfam	PF08388	Group II intron, maturase-specific domain	GIIM
UHGV-0153691_70	NCBIFam	TIGR04416.1	group II intron reverse transcriptase/maturase	NA
UHGV-0153691_70	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0153691_71	PHROG	phrog_28918	NA	unknown function
UHGV-0153691_71	UniRef90	UniRef90_A0A1C5P271	Chromosome segregation protein	NA
UHGV-0153691_71	eggNOG-mapper	97139.C824_02812	phage tail tape measure protein	NA
UHGV-0153691_71	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA