UHGV-0153698

Genome information

vOTU vOTU-001993

Genome length 43,861 bps

CDS count 72

Completeness 100.00% (complete)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153698
vOTU ID	vOTU-001993
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_472614
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.67
Jumbo phage	No

Genome content
Genome length	43,861 bps
GC content	52.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	89.56%
Average CDS length	550.00 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153698_1	PHROG	phrog_12	portal protein	head and packaging
UHGV-0153698_1	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0153698_1	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0153698_1	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0153698_1	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0153698_1	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0153698_1	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0153698_2	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0153698_2	PHROG	phrog_133	head maturation protease	head and packaging
UHGV-0153698_2	UniRef90	UniRef90_UPI001C10F40E	Clp protease ClpP	NA
UHGV-0153698_2	eggNOG-mapper	1121866.AUGK01000006_gene879	Clp protease	NA
UHGV-0153698_2	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0153698_2	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0153698_2	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0153698_3	PHROG	phrog_8680	NA	unknown function
UHGV-0153698_3	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0153698_3	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0153698_3	Pfam	PF14386	NA	DUF4417
UHGV-0153698_3	Structural annotation	PF14386	NA	NA
UHGV-0153698_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-0153698_4	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0153698_4	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0153698_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0153698_4	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0153698_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0153698_4	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0153698_4	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0153698_5	PHROG	phrog_749	NA	unknown function
UHGV-0153698_5	UniRef90	UniRef90_UPI0016630012	phage gp6-like head-tail connector protein	NA
UHGV-0153698_5	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0153698_6	PHROG	phrog_19734	NA	unknown function
UHGV-0153698_6	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0153698_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0153698_7	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0153698_7	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0153698_8	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0153698_8	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0153698_8	Structural annotation	TIGR01725	NA	NA
UHGV-0153698_9	PHROG	phrog_88	major tail protein	tail
UHGV-0153698_9	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0153698_9	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0153698_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0153698_9	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0153698_12	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0153698_12	UniRef90	UniRef90_A0A2A7B6K1	TMP_3 domain-containing protein	NA
UHGV-0153698_12	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0153698_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0153698_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0153698_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0153698_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0153698_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0153698_13	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0153698_13	eggNOG-mapper	1123315.AUIP01000014_gene1961	tail component	NA
UHGV-0153698_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0153698_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0153698_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0153698_14	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0153698_14	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0153698_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0153698_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0153698_14	COG	COG4926	Phage-related protein	NA
UHGV-0153698_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0153698_16	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0153698_16	PHROG	phrog_7158	NA	unknown function
UHGV-0153698_16	eggNOG-mapper	565653.EGBG_01980	Phage minor structural protein	NA
UHGV-0153698_16	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0153698_16	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0153698_16	Structural annotation	PF14582, MF_00905, NF008359, COG2129	NA	NA
UHGV-0153698_17	KOfam	K07273	acm; lysozyme	NA
UHGV-0153698_17	PHROG	phrog_291	endolysin	lysis
UHGV-0153698_17	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0153698_17	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0153698_17	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0153698_17	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0153698_17	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0153698_18	PHROG	phrog_1863	NA	unknown function
UHGV-0153698_18	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0153698_19	PHROG	phrog_263	holin	lysis
UHGV-0153698_19	UniRef90	UniRef90_A0A329UCA4	Phage holin	NA
UHGV-0153698_19	eggNOG-mapper	411483.FAEPRAA2165_00003	SPP1 phage holin	NA
UHGV-0153698_19	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0153698_19	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0153698_19	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0153698_20	PHROG	phrog_918	NA	unknown function
UHGV-0153698_20	UniRef90	UniRef90_UPI000EC62F11	NA	NA
UHGV-0153698_20	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0153698_20	Pfam	PF19791	NA	DUF6275
UHGV-0153698_20	Structural annotation	PF19791	NA	NA
UHGV-0153698_21	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0153698_22	eggNOG-mapper	1235802.C823_04625	NA	NA
UHGV-0153698_22	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0153698_25	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0153698_25	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0153698_25	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0153698_26	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153698_26	eggNOG-mapper	927704.SELR_12480	NA	NA
UHGV-0153698_30	PHROG	phrog_16490	NA	unknown function
UHGV-0153698_30	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0153698_31	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0153698_32	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0153698_33	KOfam	K14059	int; integrase	NA
UHGV-0153698_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0153698_33	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0153698_33	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0153698_33	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0153698_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153698_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0153698_33	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0153698_34	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0153698_34	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0153698_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153698_34	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0153698_38	PHROG	phrog_888	NA	unknown function
UHGV-0153698_38	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0153698_38	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0153698_38	Pfam	PF14471	NA	DUF4428
UHGV-0153698_38	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0153698_38	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0153698_42	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0153698_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153698_43	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0153698_43	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0153698_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153698_43	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0153698_43	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0153698_44	UniRef90	UniRef90_UPI000BEF0F65	helix-turn-helix transcriptional regulator	NA
UHGV-0153698_44	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0153698_51	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0153698_51	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0153698_54	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0153698_54	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0153698_55	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0153698_55	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0153698_55	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0153698_58	PHROG	phrog_7566	NA	unknown function
UHGV-0153698_58	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0153698_59	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0153698_59	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0153698_59	UniRef90	UniRef90_A0A2A7B6R5	Single-stranded DNA-binding protein	NA
UHGV-0153698_59	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0153698_59	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153698_59	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0153698_59	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153698_59	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0153698_59	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0153698_60	PHROG	phrog_6969	NA	unknown function
UHGV-0153698_60	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0153698_60	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0153698_60	Structural annotation	PF04182, MF_01819, TIGR04176, COG5625	NA	NA
UHGV-0153698_61	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0153698_61	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0153698_61	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0153698_61	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0153698_61	Pfam	PF13614	AAA domain	AAA_31
UHGV-0153698_61	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0153698_61	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0153698_62	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0153698_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153698_62	UniRef90	UniRef90_A0A355JDC2	NA	NA
UHGV-0153698_62	eggNOG-mapper	429009.Adeg_0686	helix-turn-helix domain protein	NA
UHGV-0153698_62	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0153698_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153698_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0153698_62	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0153698_64	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0153698_64	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0153698_64	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-0153698_64	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0153698_64	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0153698_64	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0153698_64	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0153698_65	Structural annotation	PF04545	NA	NA
UHGV-0153698_68	PHROG	phrog_21498	NA	unknown function
UHGV-0153698_68	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0153698_68	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0153698_68	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0153698_69	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153698_69	UniRef90	UniRef90_A0A2A7AM49	HNH endonuclease	NA
UHGV-0153698_69	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0153698_69	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0153698_69	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0153698_70	PHROG	phrog_13845	NA	unknown function
UHGV-0153698_70	eggNOG-mapper	508419.F8J158_9CAUD	NA	NA
UHGV-0153698_70	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0153698_70	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0153698_71	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0153698_71	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0153698_71	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0153698_71	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0153698_71	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0153698_71	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA