UHGV-0153715

Genome information

vOTU vOTU-019532

Genome length 35,823 bps

CDS count 47

Completeness 70.35% (medium-quality)

geNomad score 0.9669

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153715
vOTU ID	vOTU-019532
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_452110
BioSample	SAMN05971482
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9669
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.89
Jumbo phage	No

Genome content
Genome length	35,823 bps
GC content	40.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	95.73%
Average CDS length	732.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153715_4	Structural annotation	PF01835	NA	NA
UHGV-0153715_5	Structural annotation	PF16407, MF_04116, NF033597	NA	NA
UHGV-0153715_7	PHROG	phrog_3267	tail protein	tail
UHGV-0153715_7	Structural annotation	PF02010, MF_04116, NF041431, COG1361	NA	NA
UHGV-0153715_8	PHROG	phrog_26822	NA	unknown function
UHGV-0153715_8	eggNOG-mapper	1236514.BAKL01000067_gene4348	Phage minor structural protein	NA
UHGV-0153715_8	COG	COG4926	Phage-related protein	NA
UHGV-0153715_8	Structural annotation	PF20942, PF18141, NF000799, COG1018	NA	NA
UHGV-0153715_9	PHROG	phrog_24616	NA	unknown function
UHGV-0153715_9	UniRef90	UniRef90_F3PDX6	Conserved domain protein	NA
UHGV-0153715_9	eggNOG-mapper	762984.HMPREF9445_00184	NA	NA
UHGV-0153715_9	Structural annotation	PF20459	NA	NA
UHGV-0153715_10	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0153715_10	eggNOG-mapper	762984.HMPREF9445_00183	NA	NA
UHGV-0153715_10	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0153715_11	PHROG	phrog_37138	NA	unknown function
UHGV-0153715_11	UniRef90	UniRef90_F3PDX4	Conserved domain protein	NA
UHGV-0153715_11	eggNOG-mapper	762984.HMPREF9445_00182	NA	NA
UHGV-0153715_12	PHROG	phrog_21217	NA	unknown function
UHGV-0153715_12	eggNOG-mapper	762984.HMPREF9445_00181	NA	NA
UHGV-0153715_13	PHROG	phrog_38780	NA	unknown function
UHGV-0153715_13	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-0153715_13	eggNOG-mapper	762984.HMPREF9445_00180	NA	NA
UHGV-0153715_13	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-0153715_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0153715_14	PHROG	phrog_33547	NA	unknown function
UHGV-0153715_14	UniRef90	UniRef90_A0A3E5EXQ8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0153715_14	eggNOG-mapper	762984.HMPREF9445_00179	Clp protease	NA
UHGV-0153715_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0153715_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0153715_14	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0153715_15	PHROG	phrog_17790	NA	unknown function
UHGV-0153715_15	UniRef90	UniRef90_A0A3N2MW96	Mor domain-containing protein	NA
UHGV-0153715_15	eggNOG-mapper	762984.HMPREF9445_00174	NA	NA
UHGV-0153715_16	PHROG	phrog_37298	NA	unknown function
UHGV-0153715_16	UniRef90	UniRef90_F3PDW5	Phage tail tape measure protein, TP901 family	NA
UHGV-0153715_16	eggNOG-mapper	762984.HMPREF9445_00173	domain protein	NA
UHGV-0153715_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0153715_16	COG	COG1511	NA	NA
UHGV-0153715_16	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0153715_17	PHROG	phrog_33698	NA	unknown function
UHGV-0153715_17	eggNOG-mapper	762984.HMPREF9445_00172	NA	NA
UHGV-0153715_17	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0153715_18	PHROG	phrog_37065	NA	unknown function
UHGV-0153715_18	eggNOG-mapper	1236514.BAKL01000015_gene1631	NA	NA
UHGV-0153715_18	Structural annotation	PF17972, PF06199, NF040788	NA	NA
UHGV-0153715_19	PHROG	phrog_31246	NA	unknown function
UHGV-0153715_19	UniRef90	UniRef90_F3PDW2	Conserved domain protein	NA
UHGV-0153715_19	eggNOG-mapper	762984.HMPREF9445_00170	NA	NA
UHGV-0153715_20	PHROG	phrog_33245	NA	unknown function
UHGV-0153715_20	UniRef90	UniRef90_F3PDW1	Conserved domain protein	NA
UHGV-0153715_20	eggNOG-mapper	762984.HMPREF9445_00169	NA	NA
UHGV-0153715_20	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0153715_21	PHROG	phrog_28240	NA	unknown function
UHGV-0153715_21	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-0153715_21	eggNOG-mapper	762984.HMPREF9445_00168	NA	NA
UHGV-0153715_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0153715_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0153715_22	UniRef90	UniRef90_A0A3E5EX96	Phage portal protein	NA
UHGV-0153715_22	eggNOG-mapper	762984.HMPREF9445_00167	Terminase-like family	NA
UHGV-0153715_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0153715_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0153715_22	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0153715_23	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0153715_23	UniRef90	UniRef90_F3PDV8	Conserved domain protein	NA
UHGV-0153715_23	eggNOG-mapper	762984.HMPREF9445_00166	DNA-packaging protein gp3	NA
UHGV-0153715_23	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0153715_23	Structural annotation	PF16677	NA	NA
UHGV-0153715_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0153715_24	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0153715_24	UniRef90	UniRef90_F3PDV7	ParB-like protein	NA
UHGV-0153715_24	eggNOG-mapper	762984.HMPREF9445_00165	chromosome segregation	NA
UHGV-0153715_24	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0153715_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0153715_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0153715_24	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0153715_25	PHROG	phrog_2159	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0153715_25	UniRef90	UniRef90_A0A374V886	Chromosome partitioning protein ParB	NA
UHGV-0153715_25	eggNOG-mapper	762984.HMPREF9445_00164	NA	NA
UHGV-0153715_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0153715_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0153715_25	Structural annotation	PF02195, PF18579, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0153715_26	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0153715_26	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0153715_26	UniRef90	UniRef90_A0A374V7V9	PAPS_reduct domain-containing protein	NA
UHGV-0153715_26	eggNOG-mapper	762984.HMPREF9445_00163	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0153715_26	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0153715_26	COG	COG3969	NA	NA
UHGV-0153715_26	Structural annotation	PF01507, PF11922, MF_00063, NF006327, COG3969	NA	NA
UHGV-0153715_27	KOfam	K17462	yrrT; putative AdoMet-dependent methyltransferase [EC:2.1.1.-]	NA
UHGV-0153715_27	UniRef90	UniRef90_A0A374V8V1	Class I SAM-dependent methyltransferase	NA
UHGV-0153715_27	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-0153715_27	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0153715_27	Structural annotation	PF01209, MF_02100, TIGR01934, COG2226	NA	NA
UHGV-0153715_29	UniRef90	UniRef90_UPI00189A3D7A	P-loop NTPase fold protein	NA
UHGV-0153715_29	eggNOG-mapper	985255.APHJ01000047_gene400	KAP family P-loop domain	NA
UHGV-0153715_29	Pfam	PF07693	KAP family P-loop domain	KAP_NTPase
UHGV-0153715_29	COG	COG4928	Predicted P-loop ATPase, KAP-like	NA
UHGV-0153715_29	Structural annotation	PF07693, NF041923, COG4928	NA	NA
UHGV-0153715_30	PHROG	phrog_8684	NA	unknown function
UHGV-0153715_30	UniRef90	UniRef90_A0A412JFR9	YopX domain-containing protein	NA
UHGV-0153715_30	eggNOG-mapper	411473.RUMCAL_00280	YopX protein	NA
UHGV-0153715_30	Pfam	PF09643	YopX protein	YopX
UHGV-0153715_30	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0153715_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0153715_31	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0153715_31	eggNOG-mapper	657309.BXY_08510	NA	NA
UHGV-0153715_31	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0153715_32	PHROG	phrog_874	NA	unknown function
UHGV-0153715_32	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0153715_32	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0153715_33	PHROG	phrog_22725	NA	unknown function
UHGV-0153715_33	eggNOG-mapper	476272.RUMHYD_03319	NA	NA
UHGV-0153715_35	PHROG	phrog_12005	NA	unknown function
UHGV-0153715_37	eggNOG-mapper	1235803.C825_05365	ASCH domain	NA
UHGV-0153715_38	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0153715_38	PHROG	phrog_3193	NA	unknown function
UHGV-0153715_38	UniRef90	UniRef90_UPI00189DD365	ASCH domain-containing protein	NA
UHGV-0153715_38	eggNOG-mapper	484018.BACPLE_00681	ASCH domain	NA
UHGV-0153715_38	Pfam	PF04266	ASCH domain	ASCH
UHGV-0153715_39	eggNOG-mapper	626522.GCWU000325_00396	NA	NA
UHGV-0153715_40	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0153715_40	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0153715_40	UniRef90	UniRef90_I9RH12	Helicase ATP-binding domain-containing protein	NA
UHGV-0153715_40	eggNOG-mapper	357276.EL88_11455	DNA methylase	NA
UHGV-0153715_40	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0153715_40	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0153715_40	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0153715_40	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0153715_40	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0153715_40	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0153715_42	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0153715_42	UniRef90	UniRef90_A0A2H9PPA8	Conjugal transfer protein	NA
UHGV-0153715_42	eggNOG-mapper	1236504.HMPREF2132_11055	DNA restriction-modification system	NA
UHGV-0153715_42	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0153715_42	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0153715_43	eggNOG-mapper	763034.HMPREF9446_02095	NA	NA
UHGV-0153715_44	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0153715_44	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0153715_44	UniRef90	UniRef90_A0A3A5R353	ATP-binding protein	NA
UHGV-0153715_44	eggNOG-mapper	1347393.HG726021_gene507	DNA-dependent DNA replication	NA
UHGV-0153715_44	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0153715_44	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0153715_45	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0153715_45	UniRef90	UniRef90_A0A413UTP6	NA	NA
UHGV-0153715_45	eggNOG-mapper	1347393.HG726021_gene508	NA	NA
UHGV-0153715_45	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0153715_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0153715_45	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0153715_47	eggNOG-mapper	357276.EL88_11480	helicase superfamily c-terminal domain	NA
UHGV-0153715_47	COG	COG1061	Superfamily II DNA or RNA helicase	NA