UHGV-0153812

Genome information

vOTU vOTU-022052

Genome length 47,900 bps

CDS count 79

Completeness 81.30% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153812
vOTU ID	vOTU-022052
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_477996
BioSample	SAMN06115513
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.11
Jumbo phage	No

Genome content
Genome length	47,900 bps
GC content	39.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	89.35%
Average CDS length	545.70 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153812_1	eggNOG-mapper	537011.PREVCOP_03909	Transglycosylase SLT domain protein	NA
UHGV-0153812_1	COG	COG4623	Membrane-bound lytic murein transglycosylase MltF	NA
UHGV-0153812_3	KOfam	K19788	OLA1; obg-like ATPase 1	NA
UHGV-0153812_3	PHROG	phrog_23947	NA	unknown function
UHGV-0153812_3	UniRef90	UniRef90_A0A173SD95	Ribosome-binding ATPase YchF	NA
UHGV-0153812_3	eggNOG-mapper	622312.ROSEINA2194_03519	ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner	NA
UHGV-0153812_3	Pfam	PF01926	50S ribosome-binding GTPase	MMR_HSR1
UHGV-0153812_3	Pfam	PF06071	NA	YchF-GTPase_C
UHGV-0153812_3	NCBIFam	TIGR00092.1	redox-regulated ATPase YchF	NA
UHGV-0153812_3	COG	COG0012	Ribosome-binding ATPase YchF, GTP1/OBG family	NA
UHGV-0153812_3	HAMAP	MF_00944	Ribosome-binding ATPase YchF [ychF]	NA
UHGV-0153812_3	Structural annotation	PF02421, MF_00944, TIGR00092, COG0012	NA	NA
UHGV-0153812_4	KOfam	K14059	int; integrase	NA
UHGV-0153812_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0153812_4	UniRef90	UniRef90_R6CA87	Site-specific recombinase phage integrase family	NA
UHGV-0153812_4	eggNOG-mapper	411489.CLOL250_01458	Belongs to the 'phage' integrase family	NA
UHGV-0153812_4	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0153812_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153812_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0153812_4	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0153812_5	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0153812_5	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0153812_5	eggNOG-mapper	411489.CLOL250_01459	Excisionase from transposon Tn916	NA
UHGV-0153812_5	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0153812_5	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0153812_5	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0153812_5	Structural annotation	PF09035, TIGR01764, COG2771, COG3311	NA	NA
UHGV-0153812_6	PHROG	phrog_17284	NA	unknown function
UHGV-0153812_6	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0153812_6	eggNOG-mapper	1123309.AQYB01000007_gene1896	C-5 cytosine-specific DNA methylase	NA
UHGV-0153812_6	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0153812_6	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0153812_6	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0153812_8	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0153812_8	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0153812_8	UniRef90	UniRef90_A0A8D9UIR1	Cytosine specific methyltransferase	NA
UHGV-0153812_8	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0153812_8	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0153812_8	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0153812_8	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0153812_8	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0153812_8	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0153812_11	Structural annotation	COG4446	NA	NA
UHGV-0153812_15	PHROG	phrog_22292	NA	unknown function
UHGV-0153812_20	PHROG	phrog_9804	NA	unknown function
UHGV-0153812_20	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0153812_20	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0153812_20	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0153812_20	Structural annotation	PF11417	NA	NA
UHGV-0153812_21	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0153812_21	UniRef90	UniRef90_UPI0018994D15	replisome organizer	NA
UHGV-0153812_21	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0153812_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0153812_21	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0153812_22	Structural annotation	PF17388	NA	NA
UHGV-0153812_23	UniRef90	UniRef90_A0A1Y4R9D2	Radical SAM protein	NA
UHGV-0153812_23	eggNOG-mapper	742767.HMPREF9456_00520	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine	NA
UHGV-0153812_23	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0153812_23	COG	COG1180	Pyruvate-formate lyase-activating enzyme	NA
UHGV-0153812_23	Structural annotation	PF04055, MF_01225_A, TIGR04303, COG0535	NA	NA
UHGV-0153812_24	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0153812_25	PHROG	phrog_19106	NA	unknown function
UHGV-0153812_25	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0153812_25	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0153812_25	Structural annotation	TIGR01453	NA	NA
UHGV-0153812_26	PHROG	phrog_20593	NA	unknown function
UHGV-0153812_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0153812_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0153812_27	UniRef90	UniRef90_A0A1Y4IMA8	Single-stranded DNA-binding protein	NA
UHGV-0153812_27	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0153812_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153812_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0153812_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153812_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0153812_27	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0153812_29	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0153812_29	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0153812_29	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0153812_29	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0153812_29	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0153812_29	dbAPIS	APIS058	NA	NA
UHGV-0153812_29	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0153812_29	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0153812_31	PHROG	phrog_25456	NA	unknown function
UHGV-0153812_32	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0153812_32	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-0153812_32	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0153812_32	Pfam	PF03837	RecT family	RecT
UHGV-0153812_32	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0153812_35	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0153812_35	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153812_35	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0153812_35	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0153812_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0153812_35	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0153812_38	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0153812_38	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0153812_39	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0153812_39	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0153812_39	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0153812_39	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0153812_39	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0153812_39	COG	COG3617	Prophage antirepressor	NA
UHGV-0153812_39	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0153812_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153812_43	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-0153812_43	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0153812_43	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0153812_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0153812_43	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0153812_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0153812_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153812_44	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0153812_44	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0153812_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153812_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0153812_44	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0153812_45	PHROG	phrog_3845	NA	unknown function
UHGV-0153812_45	eggNOG-mapper	1262449.CP6013_3208	NA	NA
UHGV-0153812_47	PHROG	phrog_24159	tail fiber protein	tail
UHGV-0153812_47	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0153812_48	PHROG	phrog_6616	tail protein	tail
UHGV-0153812_48	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0153812_48	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0153812_48	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0153812_48	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0153812_49	PHROG	phrog_1194	NA	unknown function
UHGV-0153812_49	eggNOG-mapper	997830.HMPREF1124_0608	NA	NA
UHGV-0153812_49	Pfam	PF20458	NA	DUF6711
UHGV-0153812_49	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0153812_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0153812_50	UniRef90	UniRef90_A0A1I0JNI7	Phage-related protein	NA
UHGV-0153812_50	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0153812_50	COG	COG1511	NA	NA
UHGV-0153812_51	KOfam	K07273	acm; lysozyme	NA
UHGV-0153812_51	PHROG	phrog_291	endolysin	lysis
UHGV-0153812_51	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0153812_51	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0153812_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0153812_51	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0153812_51	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0153812_51	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0153812_54	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0153812_54	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0153812_55	Structural annotation	PF05657	NA	NA
UHGV-0153812_56	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0153812_56	AcrCatalog	cluster_24841	NA	NA
UHGV-0153812_57	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0153812_57	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0153812_58	PHROG	phrog_1129	holin	lysis
UHGV-0153812_58	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-0153812_58	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0153812_58	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0153812_58	Structural annotation	PF06946	NA	NA
UHGV-0153812_59	PHROG	phrog_4105	NA	unknown function
UHGV-0153812_59	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0153812_60	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0153812_61	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0153812_61	Structural annotation	PF21169	NA	NA
UHGV-0153812_62	PHROG	phrog_29	major head protein	head and packaging
UHGV-0153812_62	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0153812_62	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0153812_62	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0153812_62	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0153812_63	PHROG	phrog_909	major head protein	head and packaging
UHGV-0153812_63	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0153812_64	UniRef90	UniRef90_UPI00189AAC90	NA	NA
UHGV-0153812_64	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0153812_65	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0153812_65	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0153812_65	eggNOG-mapper	1207076.ALAT01000105_gene1902	head morphogenesis protein, SPP1	NA
UHGV-0153812_65	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0153812_65	COG	COG2369	NA	NA
UHGV-0153812_65	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0153812_66	PHROG	phrog_64	portal protein	head and packaging
UHGV-0153812_66	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0153812_66	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0153812_66	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0153812_66	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0153812_67	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0153812_68	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0153812_68	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0153812_68	Structural annotation	PF02996	NA	NA
UHGV-0153812_69	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0153812_69	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0153812_69	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0153812_69	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0153812_69	COG	COG5410	NA	NA
UHGV-0153812_69	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0153812_71	PHROG	phrog_25639	NA	unknown function
UHGV-0153812_71	eggNOG-mapper	585501.HMPREF6123_0841	NA	NA
UHGV-0153812_73	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0153812_74	Structural annotation	PF04466	NA	NA
UHGV-0153812_75	PHROG	phrog_28328	NA	unknown function
UHGV-0153812_78	PHROG	phrog_236	nucleotide kinase	other
UHGV-0153812_78	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-0153812_78	eggNOG-mapper	1200557.JHWV01000001_gene285	NA	NA
UHGV-0153812_78	Pfam	PF11753	NA	DUF3310
UHGV-0153812_78	Structural annotation	PF11753	NA	NA
UHGV-0153812_79	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0153812_79	Structural annotation	PF16677	NA	NA