UHGV-0153842

Genome information

Genome length 32,084 bps

CDS count 51

Completeness 78.86% (medium-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153842
vOTU ID	vOTU-015725
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_492364
BioSample	SAMN06110294
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.2
Jumbo phage	No

Genome content
Genome length	32,084 bps
GC content	57.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.62%
Average CDS length	579.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153842_1	PHROG	phrog_1863	NA	unknown function
UHGV-0153842_1	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0153842_1	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0153842_2	PHROG	phrog_28673	tail protein	tail
UHGV-0153842_2	UniRef90	UniRef90_A0A7X7MVN5	SGNH/GDSL hydrolase family protein	NA
UHGV-0153842_2	eggNOG-mapper	1540090.A0A0A0RS40_9CAUD	NA	NA
UHGV-0153842_2	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0153842_2	Structural annotation	PF14606, PF00722	NA	NA
UHGV-0153842_4	PHROG	phrog_3558	tail protein	tail
UHGV-0153842_4	UniRef90	UniRef90_A0A7U9XC50	Chromosome partition protein Smc	NA
UHGV-0153842_4	eggNOG-mapper	877414.ATWA01000019_gene2050	Phage minor structural protein	NA
UHGV-0153842_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0153842_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0153842_4	COG	COG4926	Phage-related protein	NA
UHGV-0153842_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0153842_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0153842_5	UniRef90	UniRef90_A0A351TQW0	MtfA protein	NA
UHGV-0153842_5	eggNOG-mapper	1304866.K413DRAFT_1235	PFAM Phage tail protein	NA
UHGV-0153842_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0153842_5	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0153842_6	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0153842_6	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0153842_6	COG	COG5412	Phage-related protein	NA
UHGV-0153842_6	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0153842_8	PHROG	phrog_1021	NA	unknown function
UHGV-0153842_8	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0153842_9	PHROG	phrog_885	major tail protein	tail
UHGV-0153842_9	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0153842_9	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0153842_10	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0153842_10	Structural annotation	PF12691	NA	NA
UHGV-0153842_11	UniRef90	UniRef90_UPI001C107D65	HK97 gp10 family phage protein	NA
UHGV-0153842_11	eggNOG-mapper	1235800.C819_02230	NA	NA
UHGV-0153842_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0153842_12	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0153842_12	UniRef90	UniRef90_R6E225	Putative phage head-tail adaptor	NA
UHGV-0153842_12	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0153842_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0153842_13	PHROG	phrog_1236	head protein	head and packaging
UHGV-0153842_13	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0153842_13	Structural annotation	PF05135	NA	NA
UHGV-0153842_14	PHROG	phrog_544	major head protein	head and packaging
UHGV-0153842_14	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-0153842_14	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0153842_14	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0153842_14	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0153842_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0153842_15	UniRef90	UniRef90_UPI001C0FC0C5	phage scaffolding protein	NA
UHGV-0153842_15	eggNOG-mapper	929506.CbC4_1215	Phage minor structural protein GP20	NA
UHGV-0153842_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0153842_15	Structural annotation	PF06810	NA	NA
UHGV-0153842_16	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0153842_16	PHROG	phrog_2649	endolysin	lysis
UHGV-0153842_16	UniRef90	UniRef90_A0A3D5IDY5	NlpC/P60 domain-containing protein	NA
UHGV-0153842_16	eggNOG-mapper	44060.JODL01000010_gene1575	Negative regulator of	NA
UHGV-0153842_16	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0153842_16	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0153842_16	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0153842_16	Structural annotation	PF00877, PF01471, NF033742, NF038080, COG0791	NA	NA
UHGV-0153842_17	PHROG	phrog_1129	holin	lysis
UHGV-0153842_17	UniRef90	UniRef90_A0A3D5IBP7	Enolase	NA
UHGV-0153842_17	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0153842_17	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0153842_17	Structural annotation	PF06946	NA	NA
UHGV-0153842_20	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0153842_20	UniRef90	UniRef90_A0A3D5ID44	Phage_Mu_F domain-containing protein	NA
UHGV-0153842_20	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0153842_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0153842_20	COG	COG2369	NA	NA
UHGV-0153842_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0153842_21	UniRef90	UniRef90_A0A3D2GX93	Portal protein	NA
UHGV-0153842_21	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0153842_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0153842_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0153842_22	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0153842_22	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0153842_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0153842_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0153842_23	UniRef90	UniRef90_A0A1Q6Q1R5	Terminase	NA
UHGV-0153842_23	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-0153842_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0153842_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0153842_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0153842_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0153842_23	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0153842_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0153842_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0153842_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0153842_24	UniRef90	UniRef90_A0A3D5IBW1	Terminase small subunit	NA
UHGV-0153842_24	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0153842_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0153842_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0153842_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0153842_25	KOfam	K07334	higB-1; toxin HigB-1	NA
UHGV-0153842_25	PHROG	phrog_3066	toxin of TA system	moron, auxiliary metabolic gene and host takeover
UHGV-0153842_25	UniRef90	UniRef90_UPI00094317A8	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0153842_25	eggNOG-mapper	478749.BRYFOR_07308	NA	NA
UHGV-0153842_25	Pfam	PF05015	RelE-like toxin of type II toxin-antitoxin system HigB	HigB-like_toxin
UHGV-0153842_26	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0153842_26	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0153842_26	UniRef90	UniRef90_A0A1Y4S6Y4	Addiction module antidote protein, HigA family	NA
UHGV-0153842_26	eggNOG-mapper	877421.AUJT01000028_gene2084	Helix-turn-helix	NA
UHGV-0153842_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153842_26	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0153842_26	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0153842_26	Structural annotation	PF12844, MF_00535, TIGR02607, COG3093, COG2856	NA	NA
UHGV-0153842_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0153842_27	UniRef90	UniRef90_UPI000496DFC6	NA	NA
UHGV-0153842_27	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0153842_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0153842_27	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0153842_30	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0153842_30	UniRef90	UniRef90_A0A3D5IDX7	DnaB_2 domain-containing protein	NA
UHGV-0153842_30	eggNOG-mapper	1139219.I569_00217	Replication initiation and membrane attachment	NA
UHGV-0153842_30	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0153842_30	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0153842_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0153842_30	Structural annotation	PF03444, MF_01911, TIGR01610, COG5529	NA	NA
UHGV-0153842_31	PHROG	phrog_4973	NA	unknown function
UHGV-0153842_31	UniRef90	UniRef90_A0A1W1YSW9	Helix-turn-helix domain-containing protein	NA
UHGV-0153842_31	eggNOG-mapper	1038869.AXAN01000006_gene942	Helix-turn-helix domain	NA
UHGV-0153842_31	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0153842_31	Structural annotation	PF14090, TIGR00373, COG4344	NA	NA
UHGV-0153842_33	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0153842_33	UniRef90	UniRef90_UPI001C0F5697	NA	NA
UHGV-0153842_33	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0153842_33	Pfam	PF06356	NA	DUF1064
UHGV-0153842_33	Structural annotation	PF06356	NA	NA
UHGV-0153842_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0153842_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0153842_34	UniRef90	UniRef90_G9WTJ7	Single-stranded DNA-binding protein	NA
UHGV-0153842_34	eggNOG-mapper	1235793.C809_02091	Single-strand binding protein family	NA
UHGV-0153842_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153842_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0153842_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153842_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0153842_39	Structural annotation	PF10656	NA	NA
UHGV-0153842_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153842_43	UniRef90	UniRef90_UPI0018AB2E42	helix-turn-helix domain-containing protein	NA
UHGV-0153842_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153842_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0153842_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0153842_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0153842_45	UniRef90	UniRef90_A0A3A9EXV7	XRE family transcriptional regulator	NA
UHGV-0153842_45	eggNOG-mapper	1151292.QEW_0314	DNA-binding helix-turn-helix protein	NA
UHGV-0153842_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0153842_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153842_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0153842_45	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0153842_47	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0153842_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153842_47	UniRef90	UniRef90_UPI001C3B31CB	Helix-turn-helix domain-containing protein	NA
UHGV-0153842_47	eggNOG-mapper	478749.BRYFOR_07503	DNA-binding helix-turn-helix protein	NA
UHGV-0153842_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153842_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0153842_47	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0153842_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0153842_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153842_48	UniRef90	UniRef90_A0A8J8SBC4	Helix-turn-helix transcriptional regulator	NA
UHGV-0153842_48	eggNOG-mapper	1154757.Q5C_05850	Peptidase S24-like	NA
UHGV-0153842_48	Pfam	PF09339	IclR helix-turn-helix domain	HTH_IclR
UHGV-0153842_48	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0153842_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153842_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0153842_49	eggNOG-mapper	483216.BACEGG_01163	NA	NA
UHGV-0153842_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0153842_51	PHROG	phrog_95	integrase	integration and excision
UHGV-0153842_51	UniRef90	UniRef90_UPI00156F85ED	recombinase family protein	NA
UHGV-0153842_51	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0153842_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0153842_51	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0153842_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0153842_51	Structural annotation	PF00239, NF041201, COG1961	NA	NA