UHGV-0153856

Genome information

Genome length 36,830 bps

CDS count 61

Completeness 100.00% (complete)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153856
vOTU ID	vOTU-046182
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_460839
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.06
Jumbo phage	No

Genome content
Genome length	36,830 bps
GC content	40.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.79%
Average CDS length	552.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153856_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0153856_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0153856_1	UniRef90	UniRef90_UPI00156F1D4A	HNH endonuclease	NA
UHGV-0153856_1	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0153856_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0153856_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0153856_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0153856_2	UniRef90	UniRef90_A0A173S7S0	RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA
UHGV-0153856_2	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0153856_2	Pfam	PF07374	NA	DUF1492
UHGV-0153856_2	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0153856_3	PHROG	phrog_6568	NA	unknown function
UHGV-0153856_3	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0153856_4	PHROG	phrog_15198	NA	unknown function
UHGV-0153856_4	UniRef90	UniRef90_A0A174HIL1	NA	NA
UHGV-0153856_4	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0153856_4	Pfam	PF04448	NA	DUF551
UHGV-0153856_5	PHROG	phrog_8684	NA	unknown function
UHGV-0153856_5	UniRef90	UniRef90_UPI00156FED61	YopX family protein	NA
UHGV-0153856_5	eggNOG-mapper	476272.RUMHYD_03337	NA	NA
UHGV-0153856_5	Pfam	PF09643	YopX protein	YopX
UHGV-0153856_5	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0153856_11	eggNOG-mapper	1235799.C818_04211	NA	NA
UHGV-0153856_12	Structural annotation	PF17516, NF037951	NA	NA
UHGV-0153856_13	UniRef90	UniRef90_A0A3A9BIX5	NA	NA
UHGV-0153856_13	eggNOG-mapper	478749.BRYFOR_07024	NA	NA
UHGV-0153856_13	Pfam	PF14199	NA	DUF4317
UHGV-0153856_13	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0153856_14	PHROG	phrog_7566	NA	unknown function
UHGV-0153856_14	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-0153856_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0153856_16	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0153856_16	UniRef90	UniRef90_A0A174L5M7	Probable chromosome-partitioning protein parB	NA
UHGV-0153856_16	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0153856_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0153856_16	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0153856_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0153856_16	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0153856_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0153856_17	eggNOG-mapper	33035.JPJF01000138_gene3005	NA	NA
UHGV-0153856_17	Structural annotation	PF01446	NA	NA
UHGV-0153856_18	PHROG	phrog_3777	NA	unknown function
UHGV-0153856_18	UniRef90	UniRef90_A0A414U8J7	NA	NA
UHGV-0153856_18	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0153856_18	Structural annotation	PF12957	NA	NA
UHGV-0153856_22	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0153856_22	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0153856_22	UniRef90	UniRef90_A0A1C5N1M2	Phage anti-repressor protein	NA
UHGV-0153856_22	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0153856_22	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0153856_22	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0153856_22	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0153856_22	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0153856_23	PHROG	phrog_16447	NA	unknown function
UHGV-0153856_23	UniRef90	UniRef90_A0A8E3SN40	NA	NA
UHGV-0153856_23	eggNOG-mapper	768486.EHR_00810	NA	NA
UHGV-0153856_23	Pfam	PF10083	NA	DUF2321
UHGV-0153856_23	COG	COG4306	NA	NA
UHGV-0153856_23	Structural annotation	PF10083, COG4306	NA	NA
UHGV-0153856_24	UniRef90	UniRef90_A0A352P178	zinc_ribbon_2 domain-containing protein (Fragment)	NA
UHGV-0153856_24	Structural annotation	PF13248	NA	NA
UHGV-0153856_26	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0153856_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0153856_26	UniRef90	UniRef90_UPI00156F4263	helix-turn-helix domain-containing protein	NA
UHGV-0153856_26	eggNOG-mapper	411461.DORFOR_01130	Helix-turn-helix XRE-family like proteins	NA
UHGV-0153856_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153856_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0153856_26	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0153856_28	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0153856_28	PHROG	phrog_7872	NA	unknown function
UHGV-0153856_28	UniRef90	UniRef90_D4M567	Ion channel	NA
UHGV-0153856_28	eggNOG-mapper	411459.RUMOBE_00964	Ion channel	NA
UHGV-0153856_28	Pfam	PF07885	Ion channel	Ion_trans_2
UHGV-0153856_28	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-0153856_28	Structural annotation	PF07885, NF040645	NA	NA
UHGV-0153856_29	PHROG	phrog_10934	NA	unknown function
UHGV-0153856_29	UniRef90	UniRef90_UPI0002E62F87	HIRAN domain-containing protein	NA
UHGV-0153856_29	eggNOG-mapper	565664.EFXG_02687	NA	NA
UHGV-0153856_30	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0153856_30	PHROG	phrog_95	integrase	integration and excision
UHGV-0153856_30	UniRef90	UniRef90_A0A1C5N2V2	Recombinase	NA
UHGV-0153856_30	eggNOG-mapper	665950.HMPREF1025_02566	Resolvase, N terminal domain	NA
UHGV-0153856_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0153856_30	Pfam	PF07508	Recombinase	Recombinase
UHGV-0153856_30	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0153856_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0153856_30	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0153856_31	UniRef90	UniRef90_R5BK75	HTH cro/C1-type domain-containing protein	NA
UHGV-0153856_31	eggNOG-mapper	411459.RUMOBE_01706	NA	NA
UHGV-0153856_35	KOfam	K07273	acm; lysozyme	NA
UHGV-0153856_35	PHROG	phrog_291	endolysin	lysis
UHGV-0153856_35	UniRef90	UniRef90_UPI00156E082A	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0153856_35	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-0153856_35	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0153856_35	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0153856_35	Pfam	PF01476	LysM domain	LysM
UHGV-0153856_35	COG	COG1388	LysM repeat	NA
UHGV-0153856_35	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0153856_36	PHROG	phrog_1129	holin	lysis
UHGV-0153856_36	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-0153856_36	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0153856_36	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0153856_36	Structural annotation	PF16079	NA	NA
UHGV-0153856_37	PHROG	phrog_937	hemolysin	other
UHGV-0153856_37	eggNOG-mapper	411459.RUMOBE_01081	NA	NA
UHGV-0153856_38	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0153856_38	Structural annotation	PF20124	NA	NA
UHGV-0153856_39	PHROG	phrog_20274	NA	unknown function
UHGV-0153856_39	UniRef90	UniRef90_A0A173TUK0	Predicted membrane protein	NA
UHGV-0153856_39	eggNOG-mapper	1235799.C818_04238	Putative ABC-transporter type IV	NA
UHGV-0153856_39	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0153856_39	COG	COG4905	NA	NA
UHGV-0153856_39	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0153856_40	UniRef90	UniRef90_A0A417WCN8	Acyl carrier protein	NA
UHGV-0153856_40	eggNOG-mapper	1235799.C818_04237	NA	NA
UHGV-0153856_40	Structural annotation	PF14301	NA	NA
UHGV-0153856_43	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0153856_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0153856_43	UniRef90	UniRef90_A0A174ILR0	Tyrosine recombinase XerD	NA
UHGV-0153856_43	eggNOG-mapper	411468.CLOSCI_02414	Belongs to the 'phage' integrase family	NA
UHGV-0153856_43	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0153856_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153856_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0153856_43	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0153856_46	PHROG	phrog_14030	NA	unknown function
UHGV-0153856_46	UniRef90	UniRef90_UPI0018999D57	phage tail tip lysozyme	NA
UHGV-0153856_46	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0153856_46	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0153856_46	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0153856_46	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0153856_46	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0153856_47	PHROG	phrog_13289	tail protein	tail
UHGV-0153856_47	UniRef90	UniRef90_UPI001570BE36	phage tail protein	NA
UHGV-0153856_47	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0153856_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0153856_47	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0153856_47	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0153856_47	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0153856_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0153856_48	UniRef90	UniRef90_UPI001570C170	phage tail protein	NA
UHGV-0153856_48	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0153856_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0153856_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0153856_49	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0153856_49	UniRef90	UniRef90_UPI0006C3C180	phage tail tape measure protein	NA
UHGV-0153856_49	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0153856_49	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0153856_49	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0153856_49	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0153856_52	PHROG	phrog_88	major tail protein	tail
UHGV-0153856_52	UniRef90	UniRef90_UPI0006C1EB28	phage tail protein	NA
UHGV-0153856_52	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-0153856_52	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0153856_52	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0153856_52	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0153856_53	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0153856_53	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0153856_53	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0153856_54	Structural annotation	PF05657	NA	NA
UHGV-0153856_55	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0153856_55	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0153856_55	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0153856_57	PHROG	phrog_10	major head protein	head and packaging
UHGV-0153856_57	UniRef90	UniRef90_A0A844KDK0	Phage major capsid protein	NA
UHGV-0153856_57	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0153856_57	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0153856_57	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0153856_57	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0153856_57	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0153856_58	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0153856_58	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0153856_58	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0153856_58	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0153856_58	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0153856_58	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0153856_58	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0153856_59	PHROG	phrog_12	portal protein	head and packaging
UHGV-0153856_59	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0153856_59	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0153856_59	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0153856_59	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0153856_59	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0153856_60	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0153856_60	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0153856_60	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0153856_60	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0153856_60	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0153856_60	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0153856_60	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0153856_61	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0153856_61	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0153856_61	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-0153856_61	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0153856_61	COG	COG5484	NA	NA
UHGV-0153856_61	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA