UHGV-0153863

Genome information

vOTU vOTU-022057

Genome length 20,194 bps

CDS count 35

Completeness 50.09% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0153863
vOTU ID	vOTU-022057
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_446390
BioSample	SAMN05971650
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.67
Jumbo phage	No

Genome content
Genome length	20,194 bps
GC content	37.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	91.02%
Average CDS length	530.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0153863_1	KOfam	K14059	int; integrase	NA
UHGV-0153863_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0153863_1	UniRef90	UniRef90_A0A1C6FW60	Tyrosine recombinase XerD	NA
UHGV-0153863_1	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0153863_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0153863_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0153863_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0153863_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0153863_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0153863_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0153863_2	UniRef90	UniRef90_A0A1C6FWX3	LexA repressor	NA
UHGV-0153863_2	eggNOG-mapper	887929.HMP0721_0588	Cytoplasmic, score 8.87	NA
UHGV-0153863_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0153863_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0153863_2	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0153863_3	eggNOG-mapper	929506.CbC4_1187	NA	NA
UHGV-0153863_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0153863_5	PHROG	phrog_21028	NA	unknown function
UHGV-0153863_6	UniRef90	UniRef90_A0A1C6FWP6	Helix-turn-helix domain	NA
UHGV-0153863_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0153863_6	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0153863_6	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0153863_10	Structural annotation	PF17574	NA	NA
UHGV-0153863_11	Structural annotation	PF09943	NA	NA
UHGV-0153863_12	PHROG	phrog_11717	NA	unknown function
UHGV-0153863_12	eggNOG-mapper	508419.F8J181_9CAUD	NA	NA
UHGV-0153863_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0153863_13	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0153863_13	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0153863_13	Structural annotation	PF05772	NA	NA
UHGV-0153863_14	PHROG	phrog_7566	NA	unknown function
UHGV-0153863_14	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0153863_14	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0153863_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0153863_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0153863_16	UniRef90	UniRef90_R6M3F2	Single-stranded DNA-binding protein	NA
UHGV-0153863_16	eggNOG-mapper	1291050.JAGE01000001_gene1719	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0153863_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0153863_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0153863_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0153863_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0153863_16	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0153863_17	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0153863_17	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0153863_17	UniRef90	UniRef90_UPI00137AD09D	NA	NA
UHGV-0153863_17	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0153863_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0153863_17	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0153863_17	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0153863_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0153863_17	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0153863_18	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0153863_18	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0153863_18	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0153863_21	PHROG	phrog_419	NA	unknown function
UHGV-0153863_21	UniRef90	UniRef90_UPI001CC11C4F	PGDYG domain-containing protein	NA
UHGV-0153863_21	eggNOG-mapper	1134413.ANNK01000120_gene2032	NA	NA
UHGV-0153863_21	Structural annotation	PF14083	NA	NA
UHGV-0153863_22	PHROG	phrog_6802	NA	unknown function
UHGV-0153863_22	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0153863_23	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-0153863_23	UniRef90	UniRef90_A0A416CVN3	RNA_pol_A_CTD domain-containing protein	NA
UHGV-0153863_23	eggNOG-mapper	1321774.HMPREF9108_00245	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0153863_23	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0153863_23	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-0153863_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0153863_26	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0153863_26	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0153863_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0153863_26	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0153863_27	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0153863_27	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0153863_27	UniRef90	UniRef90_A0A1C6E4Y4	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase	NA
UHGV-0153863_27	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0153863_27	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0153863_27	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0153863_27	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0153863_27	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0153863_28	PHROG	phrog_21498	NA	unknown function
UHGV-0153863_28	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0153863_28	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0153863_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0153863_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0153863_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0153863_29	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-0153863_29	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0153863_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0153863_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0153863_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0153863_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0153863_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0153863_30	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-0153863_30	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0153863_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0153863_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0153863_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0153863_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0153863_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0153863_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0153863_31	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-0153863_31	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0153863_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0153863_31	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0153863_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0153863_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0153863_32	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-0153863_32	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0153863_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0153863_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0153863_32	COG	COG2369	NA	NA
UHGV-0153863_32	Structural annotation	PF04233, PF00583, TIGR01641, NF000487, COG1246, COG2369	NA	NA
UHGV-0153863_34	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0153863_34	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-0153863_34	eggNOG-mapper	1123250.KB908414_gene2104	NA	NA
UHGV-0153863_34	Pfam	PF14265	NA	DUF4355
UHGV-0153863_34	Structural annotation	PF14265	NA	NA
UHGV-0153863_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0153863_35	UniRef90	UniRef90_A0A8H9QZU7	Phage major capsid protein	NA
UHGV-0153863_35	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0153863_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0153863_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0153863_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA