UHGV-0154009

Genome information

vOTU vOTU-019541

Genome length 20,250 bps

CDS count 28

Completeness 58.13% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154009
vOTU ID	vOTU-019541
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_495476
BioSample	SAMN06110318
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.14
Jumbo phage	No

Genome content
Genome length	20,250 bps
GC content	56.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	94.51%
Average CDS length	686.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154009_2	PHROG	phrog_199	holin	lysis
UHGV-0154009_2	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-0154009_2	eggNOG-mapper	742738.HMPREF9460_00365	Bacteriophage holin family	NA
UHGV-0154009_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0154009_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0154009_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0154009_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0154009_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0154009_3	PHROG	phrog_5182	endolysin	lysis
UHGV-0154009_3	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0154009_3	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0154009_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0154009_3	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0154009_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0154009_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0154009_4	PHROG	phrog_24267	NA	unknown function
UHGV-0154009_4	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0154009_4	COG	COG4675	Phage tail collar domain	NA
UHGV-0154009_5	PHROG	phrog_38190	NA	unknown function
UHGV-0154009_5	eggNOG-mapper	762211.BSTEL_0610	NA	NA
UHGV-0154009_6	PHROG	phrog_6616	tail protein	tail
UHGV-0154009_6	Structural annotation	PF13550, PF16466, NF033848, COG3500	NA	NA
UHGV-0154009_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0154009_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0154009_8	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0154009_8	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0154009_8	COG	COG1511	NA	NA
UHGV-0154009_8	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0154009_9	PHROG	phrog_706	NA	unknown function
UHGV-0154009_9	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0154009_9	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0154009_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0154009_9	Structural annotation	PF06854	NA	NA
UHGV-0154009_10	PHROG	phrog_11299	NA	unknown function
UHGV-0154009_10	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0154009_10	Structural annotation	PF10666	NA	NA
UHGV-0154009_11	PHROG	phrog_3099	NA	unknown function
UHGV-0154009_11	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0154009_11	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0154009_12	PHROG	phrog_3266	tail completion	connector
UHGV-0154009_12	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0154009_12	Structural annotation	PF12691	NA	NA
UHGV-0154009_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0154009_13	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0154009_13	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0154009_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0154009_13	Structural annotation	PF11114	NA	NA
UHGV-0154009_14	PHROG	phrog_3366	NA	unknown function
UHGV-0154009_14	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0154009_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0154009_15	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0154009_16	PHROG	phrog_267	major head protein	head and packaging
UHGV-0154009_16	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0154009_16	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0154009_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0154009_17	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0154009_17	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-0154009_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0154009_17	Structural annotation	PF06810	NA	NA
UHGV-0154009_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0154009_18	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0154009_18	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0154009_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0154009_18	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0154009_18	COG	COG2369	NA	NA
UHGV-0154009_18	Structural annotation	PF06152, PF18812	NA	NA
UHGV-0154009_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0154009_19	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0154009_19	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0154009_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0154009_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0154009_20	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0154009_20	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0154009_20	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0154009_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0154009_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0154009_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0154009_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0154009_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0154009_20	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0154009_21	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0154009_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0154009_22	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0154009_22	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0154009_22	Pfam	PF07374	NA	DUF1492
UHGV-0154009_22	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0154009_24	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0154009_24	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0154009_24	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0154009_25	PHROG	phrog_5781	NA	unknown function
UHGV-0154009_25	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0154009_25	Pfam	PF14359	NA	DUF4406
UHGV-0154009_25	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0154009_25	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0154009_26	PHROG	phrog_1029	NA	unknown function
UHGV-0154009_26	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0154009_26	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0154009_27	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0154009_27	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0154009_27	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0154009_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0154009_28	PHROG	phrog_13621	NA	unknown function
UHGV-0154009_28	UniRef90	UniRef90_UPI001E2B88CF	DNA cytosine methyltransferase	NA
UHGV-0154009_28	eggNOG-mapper	1519439.JPJG01000060_gene1872	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0154009_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0154009_28	COG	COG0270	DNA-cytosine methylase	NA