UHGV-0154030

Genome information

vOTU vOTU-019543

Genome length 30,748 bps

CDS count 43

Completeness 77.83% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154030
vOTU ID	vOTU-019543
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_464641
BioSample	SAMN06111998
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.07
Jumbo phage	No

Genome content
Genome length	30,748 bps
GC content	58.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.82%
Average CDS length	674.72 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154030_1	Structural annotation	PF17917	NA	NA
UHGV-0154030_2	PHROG	phrog_15863	NA	unknown function
UHGV-0154030_2	UniRef90	UniRef90_A0A1Y3R3M0	J domain-containing protein	NA
UHGV-0154030_2	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0154030_2	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0154030_4	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-0154030_4	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0154030_4	Structural annotation	PF10723	NA	NA
UHGV-0154030_5	eggNOG-mapper	693746.OBV_01750	NA	NA
UHGV-0154030_5	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0154030_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0154030_8	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0154030_8	UniRef90	UniRef90_U2BVD4	Phage terminase, large subunit, PBSX family	NA
UHGV-0154030_8	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0154030_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0154030_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0154030_8	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0154030_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-0154030_10	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0154030_10	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0154030_11	eggNOG-mapper	755731.Clo1100_2435	NA	NA
UHGV-0154030_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0154030_12	UniRef90	UniRef90_A0A6A8VJ17	N4-gp56 family major capsid protein	NA
UHGV-0154030_12	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0154030_12	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0154030_12	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0154030_13	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0154030_13	Structural annotation	PF11650	NA	NA
UHGV-0154030_14	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0154030_14	eggNOG-mapper	1519439.JPJG01000011_gene54	NA	NA
UHGV-0154030_14	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0154030_15	eggNOG-mapper	742738.HMPREF9460_01382	NA	NA
UHGV-0154030_16	PHROG	phrog_22773	NA	unknown function
UHGV-0154030_16	UniRef90	UniRef90_G9YP62	Toxin-antitoxin system, toxin component domain protein	NA
UHGV-0154030_16	eggNOG-mapper	742738.HMPREF9460_03965	NA	NA
UHGV-0154030_17	PHROG	phrog_2310	NA	unknown function
UHGV-0154030_18	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0154030_18	PHROG	phrog_18955	NA	unknown function
UHGV-0154030_18	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-0154030_18	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-0154030_18	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0154030_18	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0154030_18	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0154030_18	Structural annotation	PF09992, PF01510, PF18342, NF008758, NF040678, COG5632, COG4632, COG4991	NA	NA
UHGV-0154030_19	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0154030_20	UniRef90	UniRef90_U2AS96	MuF_C domain-containing protein	NA
UHGV-0154030_20	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0154030_20	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0154030_20	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0154030_21	PHROG	phrog_13256	NA	unknown function
UHGV-0154030_21	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0154030_22	PHROG	phrog_937	hemolysin	other
UHGV-0154030_22	eggNOG-mapper	445972.ANACOL_01873	NA	NA
UHGV-0154030_23	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0154030_23	UniRef90	UniRef90_A0A174RNL1	RNA polymerase sigma factor SigS	NA
UHGV-0154030_23	eggNOG-mapper	693746.OBV_22080	Sigma-70 region 2	NA
UHGV-0154030_23	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0154030_23	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0154030_23	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0154030_23	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0154030_23	Structural annotation	PF04542, PF08281, MF_00962, NF006158, COG1191	NA	NA
UHGV-0154030_24	PHROG	phrog_924	NA	unknown function
UHGV-0154030_24	UniRef90	UniRef90_A0A1C7FSW4	NA	NA
UHGV-0154030_24	Pfam	PF04448	NA	DUF551
UHGV-0154030_24	Structural annotation	NF041588	NA	NA
UHGV-0154030_26	PHROG	phrog_8684	NA	unknown function
UHGV-0154030_26	UniRef90	UniRef90_A0A1C5WBP0	YopX protein	NA
UHGV-0154030_26	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0154030_26	Pfam	PF09643	YopX protein	YopX
UHGV-0154030_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0154030_31	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154030_31	eggNOG-mapper	1507.HMPREF0262_01169	NA	NA
UHGV-0154030_33	PHROG	phrog_38832	NA	unknown function
UHGV-0154030_33	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0154030_34	PHROG	phrog_37865	NA	unknown function
UHGV-0154030_36	Structural annotation	NF000937	NA	NA
UHGV-0154030_38	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0154030_38	UniRef90	UniRef90_UPI0012AC12CD	Lar family restriction alleviation protein	NA
UHGV-0154030_38	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0154030_38	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0154030_38	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0154030_39	Structural annotation	PF12759	NA	NA
UHGV-0154030_40	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0154030_40	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0154030_40	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0154030_40	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0154030_40	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0154030_42	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0154030_42	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0154030_42	UniRef90	UniRef90_UPI0018973262	AAA family ATPase	NA
UHGV-0154030_42	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0154030_42	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0154030_42	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0154030_42	COG	COG0305	Replicative DNA helicase	NA
UHGV-0154030_42	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0154030_43	PHROG	phrog_15768	NA	unknown function
UHGV-0154030_43	eggNOG-mapper	203119.Cthe_2466	NA	NA