UHGV-0154063

Genome information

Genome length 31,156 bps

CDS count 47

Completeness 82.48% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154063
vOTU ID	vOTU-027627
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_446462
BioSample	SAMN05971729
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.57
Jumbo phage	No

Genome content
Genome length	31,156 bps
GC content	51.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.13%
Average CDS length	610.79 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154063_1	KOfam	K14059	int; integrase	NA
UHGV-0154063_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0154063_1	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-0154063_1	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0154063_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0154063_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0154063_1	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0154063_2	Structural annotation	PF08797, TIGR00086	NA	NA
UHGV-0154063_3	PHROG	phrog_87	metallo-protease	other
UHGV-0154063_3	UniRef90	UniRef90_A0A1Y4S739	Peptidase_M78 domain-containing protein	NA
UHGV-0154063_3	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0154063_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0154063_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0154063_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0154063_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0154063_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0154063_4	UniRef90	UniRef90_A0A3D5TL51	XRE family transcriptional regulator	NA
UHGV-0154063_4	eggNOG-mapper	445972.ANACOL_01759	sequence-specific DNA binding	NA
UHGV-0154063_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154063_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0154063_4	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0154063_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0154063_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0154063_5	UniRef90	UniRef90_A0A3D5TL86	Transcriptional regulator	NA
UHGV-0154063_5	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0154063_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154063_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0154063_5	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0154063_6	PHROG	phrog_6058	NA	unknown function
UHGV-0154063_6	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-0154063_8	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0154063_8	PHROG	phrog_18750	NA	unknown function
UHGV-0154063_8	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0154063_8	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-0154063_8	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0154063_8	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0154063_8	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0154063_11	PHROG	phrog_22040	NA	unknown function
UHGV-0154063_11	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0154063_15	PHROG	phrog_824	NA	unknown function
UHGV-0154063_15	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-0154063_15	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-0154063_15	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0154063_15	Structural annotation	PF08774, COG1996	NA	NA
UHGV-0154063_16	PHROG	phrog_7445	NA	unknown function
UHGV-0154063_16	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0154063_16	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0154063_16	Structural annotation	PF14058	NA	NA
UHGV-0154063_17	PHROG	phrog_8470	NA	unknown function
UHGV-0154063_17	UniRef90	UniRef90_A0A238ZSA1	PcfJ-like protein	NA
UHGV-0154063_17	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-0154063_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0154063_17	Structural annotation	PF14284	NA	NA
UHGV-0154063_18	PHROG	phrog_15609	NA	unknown function
UHGV-0154063_18	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0154063_18	Pfam	PF11300	NA	DUF3102
UHGV-0154063_18	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0154063_19	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0154063_19	eggNOG-mapper	537013.CLOSTMETH_02010	Helix-turn-helix XRE-family like proteins	NA
UHGV-0154063_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154063_24	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0154063_24	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0154063_25	PHROG	phrog_24518	NA	unknown function
UHGV-0154063_25	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-0154063_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0154063_26	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0154063_26	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0154063_28	PHROG	phrog_8684	NA	unknown function
UHGV-0154063_28	UniRef90	UniRef90_UPI001B83E681	YopX family protein	NA
UHGV-0154063_28	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-0154063_28	Pfam	PF09643	YopX protein	YopX
UHGV-0154063_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0154063_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0154063_29	PHROG	phrog_11237	NA	unknown function
UHGV-0154063_29	eggNOG-mapper	537013.CLOSTMETH_01096	NA	NA
UHGV-0154063_29	Structural annotation	TIGR01636	NA	NA
UHGV-0154063_30	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0154063_30	PHROG	phrog_12862	NA	unknown function
UHGV-0154063_30	UniRef90	UniRef90_UPI000A26DFF4	site-specific DNA-methyltransferase	NA
UHGV-0154063_30	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0154063_30	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0154063_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0154063_30	COG	COG0863	DNA modification methylase	NA
UHGV-0154063_30	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0154063_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0154063_31	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154063_31	UniRef90	UniRef90_UPI0006D7C695	HNH endonuclease	NA
UHGV-0154063_31	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-0154063_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0154063_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0154063_31	Structural annotation	PF05766	NA	NA
UHGV-0154063_32	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0154063_32	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-0154063_32	eggNOG-mapper	1567013.A0A0A7S0C4_9CAUD	Phage terminase, small subunit	NA
UHGV-0154063_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0154063_32	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0154063_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0154063_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0154063_33	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-0154063_33	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-0154063_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0154063_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0154063_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0154063_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0154063_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0154063_34	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-0154063_34	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0154063_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0154063_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0154063_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0154063_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0154063_35	PHROG	phrog_16951	NA	unknown function
UHGV-0154063_35	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-0154063_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0154063_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0154063_36	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-0154063_36	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0154063_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0154063_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0154063_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0154063_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0154063_37	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0154063_37	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-0154063_37	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-0154063_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0154063_37	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0154063_37	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0154063_38	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0154063_38	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0154063_38	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0154063_38	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0154063_39	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-0154063_39	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0154063_39	Structural annotation	TIGR01725	NA	NA
UHGV-0154063_40	PHROG	phrog_78	tail terminator	connector
UHGV-0154063_40	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-0154063_40	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0154063_41	PHROG	phrog_88	major tail protein	tail
UHGV-0154063_41	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-0154063_41	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0154063_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0154063_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0154063_42	Structural annotation	PF11836	NA	NA
UHGV-0154063_43	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0154063_43	UniRef90	UniRef90_A0A316QKN8	Phage tail protein (Fragment)	NA
UHGV-0154063_43	eggNOG-mapper	994573.T472_0201810	tape measure	NA
UHGV-0154063_43	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0154063_43	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0154063_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0154063_44	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0154063_44	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0154063_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0154063_44	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0154063_45	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0154063_45	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-0154063_45	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0154063_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0154063_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0154063_45	COG	COG4926	Phage-related protein	NA
UHGV-0154063_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0154063_46	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0154063_46	Structural annotation	PF10651, NF009453	NA	NA