UHGV-0154225

Genome information

Genome length 37,451 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154225
vOTU ID	vOTU-066893
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_491793
BioSample	SAMN06110313
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - plasmid or chromosomal
viralVerify score	0.13
Jumbo phage	No

Genome content
Genome length	37,451 bps
GC content	43.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.62%
Average CDS length	693.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154225_1	eggNOG-mapper	411459.RUMOBE_03456	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol	NA
UHGV-0154225_1	COG	COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	NA
UHGV-0154225_2	KOfam	K07816	E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]	NA
UHGV-0154225_2	PHROG	phrog_4773	NA	unknown function
UHGV-0154225_2	UniRef90	UniRef90_A0A1C6AVB4	GTP pyrophosphokinase ywaC	NA
UHGV-0154225_2	eggNOG-mapper	411469.EUBHAL_01643	NA	NA
UHGV-0154225_2	Pfam	PF04607	Region found in RelA / SpoT proteins	RelA_SpoT
UHGV-0154225_2	COG	COG2357	ppGpp synthetase catalytic domain (RelA/SpoT-type nucleotidyltranferase)	NA
UHGV-0154225_3	UniRef90	UniRef90_A0A3E4GNQ7	Restriction endonuclease subunit S	NA
UHGV-0154225_3	eggNOG-mapper	2113.MCFN_00785	type I restriction modification DNA specificity domain	NA
UHGV-0154225_3	PADLOC	Specificity_I_00087	Type I specificity subunit	RM
UHGV-0154225_3	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-0154225_3	COG	COG0732	Restriction endonuclease S subunit	NA
UHGV-0154225_4	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0154225_4	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-0154225_4	UniRef90	UniRef90_A0A173YS91	DNA methylase	NA
UHGV-0154225_4	eggNOG-mapper	1232447.BAHW02000027_gene2091	helicase C-terminal domain protein	NA
UHGV-0154225_4	PADLOC	Specificity_I_00017	Type I specificity subunit	RM
UHGV-0154225_4	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-0154225_4	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0154225_5	PHROG	phrog_2455	NA	unknown function
UHGV-0154225_5	UniRef90	UniRef90_A0A173ZMJ2	Plasmid stabilisation system protein	NA
UHGV-0154225_5	eggNOG-mapper	1235790.C805_03645	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0154225_5	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0154225_5	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-0154225_6	KOfam	K19165	phd; antitoxin Phd	NA
UHGV-0154225_6	UniRef90	UniRef90_C0B4G7	Antitoxin	NA
UHGV-0154225_6	eggNOG-mapper	411462.DORLON_02497	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0154225_6	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0154225_6	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0154225_6	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0154225_6	Structural annotation	PF02604, TIGR01552, COG2161	NA	NA
UHGV-0154225_8	KOfam	K03305	TC.POT; proton-dependent oligopeptide transporter, POT family	NA
UHGV-0154225_8	PHROG	phrog_2034	NA	unknown function
UHGV-0154225_8	UniRef90	UniRef90_A0A173YQW3	Di-/tripeptide transporter	NA
UHGV-0154225_8	eggNOG-mapper	158787.BSCA_2455	amino acid peptide transporter	NA
UHGV-0154225_8	Pfam	PF00854	POT family	PTR2
UHGV-0154225_8	NCBIFam	TIGR00924.1	oligopeptide:H+ symporter	NA
UHGV-0154225_8	COG	COG3104	Dipeptide/tripeptide permease	NA
UHGV-0154225_10	PHROG	phrog_20274	NA	unknown function
UHGV-0154225_10	UniRef90	UniRef90_A0A173YPJ0	Predicted membrane protein	NA
UHGV-0154225_10	eggNOG-mapper	742723.HMPREF9477_00627	Putative ABC-transporter type IV	NA
UHGV-0154225_10	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0154225_10	COG	COG4905	NA	NA
UHGV-0154225_10	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0154225_11	KOfam	K06168	miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]	NA
UHGV-0154225_11	UniRef90	UniRef90_A0A173ZMK5	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	NA
UHGV-0154225_11	eggNOG-mapper	556261.HMPREF0240_02898	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0154225_11	Pfam	PF00919	NA	UPF0004
UHGV-0154225_11	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0154225_11	Pfam	PF01938	TRAM domain	TRAM
UHGV-0154225_11	NCBIFam	TIGR01574.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA
UHGV-0154225_11	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0154225_11	HAMAP	MF_01864	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]	NA
UHGV-0154225_11	Structural annotation	PF00919, PF20903, MF_01864, TIGR01574, COG0621	NA	NA
UHGV-0154225_12	KOfam	K07273	acm; lysozyme	NA
UHGV-0154225_12	PHROG	phrog_291	endolysin	lysis
UHGV-0154225_12	UniRef90	UniRef90_A0A374JNX4	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0154225_12	eggNOG-mapper	445975.COLSTE_02142	CW_7 repeat	NA
UHGV-0154225_12	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0154225_12	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0154225_12	Pfam	PF01476	LysM domain	LysM
UHGV-0154225_12	COG	COG1388	LysM repeat	NA
UHGV-0154225_12	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0154225_13	PHROG	phrog_263	holin	lysis
UHGV-0154225_13	UniRef90	UniRef90_R6GD40	Holin SPP1 family	NA
UHGV-0154225_13	eggNOG-mapper	764291.STRUR_2085	SPP1 phage holin	NA
UHGV-0154225_13	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0154225_13	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0154225_13	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0154225_14	eggNOG-mapper	742733.HMPREF9469_01798	NA	NA
UHGV-0154225_17	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0154225_17	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0154225_17	UniRef90	UniRef90_A0A374JNY7	Reverse transcriptase domain-containing protein	NA
UHGV-0154225_17	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0154225_17	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0154225_17	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0154225_17	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0154225_17	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0154225_18	PHROG	phrog_17147	NA	unknown function
UHGV-0154225_18	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0154225_18	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0154225_18	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0154225_18	Structural annotation	PF10651	NA	NA
UHGV-0154225_21	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0154225_21	UniRef90	UniRef90_UPI00189EFADE	phage tail protein	NA
UHGV-0154225_21	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0154225_21	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0154225_21	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0154225_21	COG	COG4926	Phage-related protein	NA
UHGV-0154225_21	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0154225_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0154225_22	UniRef90	UniRef90_R6GVG8	Phage putative tail component N-domain protein	NA
UHGV-0154225_22	eggNOG-mapper	1567011.A0A0A7RWN1_9VIRU	Phage tail protein	NA
UHGV-0154225_22	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0154225_22	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0154225_23	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0154225_23	UniRef90	UniRef90_A0A374JNY3	PhageMin_Tail domain-containing protein	NA
UHGV-0154225_23	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0154225_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0154225_23	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0154225_23	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0154225_24	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-0154225_24	Structural annotation	PF17388	NA	NA
UHGV-0154225_25	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0154225_25	eggNOG-mapper	411468.CLOSCI_00543	NA	NA
UHGV-0154225_25	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0154225_26	eggNOG-mapper	411468.CLOSCI_00544	NA	NA
UHGV-0154225_26	Structural annotation	PF20765	NA	NA
UHGV-0154225_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0154225_27	UniRef90	UniRef90_A0A374JNZ6	HK97 gp10 family phage protein	NA
UHGV-0154225_27	eggNOG-mapper	411902.CLOBOL_03876	COG NOG18351 non supervised orthologous group	NA
UHGV-0154225_27	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0154225_28	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0154225_28	UniRef90	UniRef90_UPI00189EBA11	phage head closure protein	NA
UHGV-0154225_28	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0154225_28	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0154225_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0154225_29	PHROG	phrog_5223	neck protein	connector
UHGV-0154225_29	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-0154225_29	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-0154225_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0154225_30	UniRef90	UniRef90_A0A374JNW0	Phage major capsid protein	NA
UHGV-0154225_30	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-0154225_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0154225_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0154225_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0154225_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0154225_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0154225_31	UniRef90	UniRef90_A0A374JQH6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0154225_31	eggNOG-mapper	411468.CLOSCI_00549	COG COG0740 Protease subunit of ATP-dependent Clp proteases	NA
UHGV-0154225_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0154225_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0154225_31	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0154225_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0154225_32	UniRef90	UniRef90_A0A374JP76	Phage portal protein	NA
UHGV-0154225_32	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-0154225_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0154225_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0154225_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0154225_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0154225_33	UniRef90	UniRef90_A0A374JP15	Terminase large subunit	NA
UHGV-0154225_33	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0154225_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0154225_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0154225_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0154225_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0154225_34	PHROG	phrog_1066	NA	unknown function
UHGV-0154225_34	eggNOG-mapper	411902.CLOBOL_03883	NA	NA
UHGV-0154225_35	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0154225_35	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154225_35	UniRef90	UniRef90_A0A374JQS6	HNH endonuclease	NA
UHGV-0154225_35	eggNOG-mapper	411468.CLOSCI_00553	HNH endonuclease	NA
UHGV-0154225_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0154225_36	eggNOG-mapper	411468.CLOSCI_00554	NA	NA
UHGV-0154225_37	eggNOG-mapper	1235800.C819_02253	NA	NA
UHGV-0154225_38	PHROG	phrog_824	NA	unknown function
UHGV-0154225_38	UniRef90	UniRef90_A0A374JR68	VRR-NUC domain-containing protein	NA
UHGV-0154225_38	eggNOG-mapper	411468.CLOSCI_00556	VRR_NUC	NA
UHGV-0154225_38	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0154225_39	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0154225_39	eggNOG-mapper	411468.CLOSCI_00558	NA	NA
UHGV-0154225_39	Structural annotation	PF21578	NA	NA
UHGV-0154225_42	PHROG	phrog_24386	NA	unknown function
UHGV-0154225_42	eggNOG-mapper	411468.CLOSCI_00562	COG NOG28949 non supervised orthologous group	NA
UHGV-0154225_42	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0154225_42	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0154225_44	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0154225_44	PHROG	phrog_25385	NA	unknown function
UHGV-0154225_44	UniRef90	UniRef90_UPI00189D9989	DNA cytosine methyltransferase	NA
UHGV-0154225_44	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-0154225_44	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0154225_44	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0154225_46	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0154225_46	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0154225_46	UniRef90	UniRef90_UPI00189F9B8A	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0154225_46	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0154225_46	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0154225_46	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0154225_46	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0154225_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0154225_46	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0154225_47	PHROG	phrog_20014	NA	unknown function
UHGV-0154225_47	eggNOG-mapper	1235798.C817_02590	NA	NA
UHGV-0154225_49	eggNOG-mapper	411468.CLOSCI_00572	NA	NA