UHGV-0154236

Genome information

Genome length 29,788 bps

CDS count 40

Completeness 69.66% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154236
vOTU ID	vOTU-016895
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_456104
BioSample	SAMN05971512
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.35
Jumbo phage	No

Genome content
Genome length	29,788 bps
GC content	42.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	94.42%
Average CDS length	707.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154236_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0154236_1	PHROG	phrog_435	endolysin	lysis
UHGV-0154236_1	UniRef90	UniRef90_A0A416MN83	MurNAc-LAA domain-containing protein	NA
UHGV-0154236_1	eggNOG-mapper	478749.BRYFOR_07564	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0154236_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0154236_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0154236_1	COG	COG3087	Cell division protein FtsN	NA
UHGV-0154236_1	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0154236_2	PHROG	phrog_199	holin	lysis
UHGV-0154236_2	UniRef90	UniRef90_A0A3D3UA08	Holin	NA
UHGV-0154236_2	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0154236_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0154236_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0154236_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0154236_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0154236_4	UniRef90	UniRef90_A0A3D3UB27	BppU_N domain-containing protein	NA
UHGV-0154236_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0154236_4	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0154236_5	PHROG	phrog_3558	tail protein	tail
UHGV-0154236_5	UniRef90	UniRef90_A0A3D3U8S7	Peptidase S74 domain-containing protein	NA
UHGV-0154236_5	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0154236_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0154236_5	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0154236_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0154236_5	COG	COG4926	Phage-related protein	NA
UHGV-0154236_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0154236_6	UniRef90	UniRef90_A0A416L6F4	MtfA protein	NA
UHGV-0154236_6	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-0154236_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0154236_6	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0154236_7	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0154236_7	eggNOG-mapper	411483.FAEPRAA2165_01911	Phage tail tape measure protein, TP901 family	NA
UHGV-0154236_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0154236_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0154236_7	COG	COG5283	Phage-related tail protein	NA
UHGV-0154236_7	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0154236_8	PHROG	phrog_706	NA	unknown function
UHGV-0154236_8	UniRef90	UniRef90_A0A1M6B1I0	Bacteriophage Gp15 protein	NA
UHGV-0154236_8	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-0154236_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0154236_8	Structural annotation	PF06854	NA	NA
UHGV-0154236_10	PHROG	phrog_820	major tail protein	tail
UHGV-0154236_10	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0154236_10	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0154236_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0154236_11	PHROG	phrog_3266	tail completion	connector
UHGV-0154236_11	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0154236_11	Structural annotation	PF12691	NA	NA
UHGV-0154236_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0154236_12	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-0154236_12	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0154236_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0154236_12	Structural annotation	PF11114	NA	NA
UHGV-0154236_13	PHROG	phrog_3366	NA	unknown function
UHGV-0154236_13	Structural annotation	PF20536	NA	NA
UHGV-0154236_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0154236_14	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0154236_15	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0154236_15	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0154236_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0154236_16	UniRef90	UniRef90_A0A174LGM6	Phage minor structural protein GP20	NA
UHGV-0154236_16	eggNOG-mapper	33035.JPJF01000030_gene2293	PFAM Phage minor structural	NA
UHGV-0154236_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0154236_17	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0154236_17	UniRef90	UniRef90_A0A417BWH3	NA	NA
UHGV-0154236_17	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0154236_17	Pfam	PF14359	NA	DUF4406
UHGV-0154236_17	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0154236_18	PHROG	phrog_918	NA	unknown function
UHGV-0154236_18	UniRef90	UniRef90_UPI00189D39C2	NA	NA
UHGV-0154236_18	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0154236_18	Pfam	PF19791	NA	DUF6275
UHGV-0154236_18	Structural annotation	PF19791	NA	NA
UHGV-0154236_19	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-0154236_20	PHROG	phrog_15041	NA	unknown function
UHGV-0154236_20	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0154236_20	Structural annotation	PF10827	NA	NA
UHGV-0154236_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0154236_22	eggNOG-mapper	471875.RUMLAC_01547	NA	NA
UHGV-0154236_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0154236_22	COG	COG2369	NA	NA
UHGV-0154236_23	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154236_23	UniRef90	UniRef90_A6BES1	AP2 domain protein	NA
UHGV-0154236_23	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0154236_23	Pfam	PF00847	AP2 domain	AP2
UHGV-0154236_23	Structural annotation	PF17375	NA	NA
UHGV-0154236_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0154236_24	UniRef90	UniRef90_A0A3D3U8R6	Minor capsid protein	NA
UHGV-0154236_24	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0154236_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0154236_24	COG	COG2369	NA	NA
UHGV-0154236_24	Structural annotation	PF06152	NA	NA
UHGV-0154236_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0154236_25	UniRef90	UniRef90_A0A174L8Y1	Phage portal protein, putative, A118 family	NA
UHGV-0154236_25	eggNOG-mapper	1235799.C818_04218	NA	NA
UHGV-0154236_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0154236_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0154236_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0154236_26	UniRef90	UniRef90_A0A7G5MSQ6	PBSX family phage terminase large subunit	NA
UHGV-0154236_26	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-0154236_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0154236_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0154236_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0154236_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0154236_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0154236_27	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0154236_27	UniRef90	UniRef90_UPI001D08F556	terminase small subunit	NA
UHGV-0154236_27	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0154236_27	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0154236_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0154236_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0154236_27	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0154236_30	UniRef90	UniRef90_UPI00084D17C5	NA	NA
UHGV-0154236_30	Pfam	PF14213	NA	DUF4325
UHGV-0154236_30	Structural annotation	PF14213	NA	NA
UHGV-0154236_31	eggNOG-mapper	515620.EUBELI_20304	NA	NA
UHGV-0154236_33	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0154236_33	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0154236_33	UniRef90	UniRef90_A0A373BIQ5	HicB family protein	NA
UHGV-0154236_33	eggNOG-mapper	1120998.AUFC01000014_gene1700	NA	NA
UHGV-0154236_33	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0154236_33	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0154236_33	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0154236_34	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0154236_34	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0154236_34	UniRef90	UniRef90_A0A7C6P2N4	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0154236_34	eggNOG-mapper	537007.BLAHAN_05444	NA	NA
UHGV-0154236_34	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0154236_34	Structural annotation	PF07927	NA	NA
UHGV-0154236_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0154236_35	UniRef90	UniRef90_A0A3D3U8Q6	Sigma70_r4 domain-containing protein	NA
UHGV-0154236_35	eggNOG-mapper	411460.RUMTOR_02080	NA	NA
UHGV-0154236_35	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0154236_39	PHROG	phrog_7566	NA	unknown function
UHGV-0154236_39	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0154236_40	PHROG	phrog_15077	NA	unknown function
UHGV-0154236_40	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0154236_40	eggNOG-mapper	411902.CLOBOL_05696	NA	NA
UHGV-0154236_40	Structural annotation	PF11300, NF033725	NA	NA