UHGV-0154271

Genome information

Genome length 29,297 bps

CDS count 35

Completeness 52.37% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154271
vOTU ID	vOTU-027638
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_466001
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.64
Jumbo phage	No

Genome content
Genome length	29,297 bps
GC content	45.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	94.30%
Average CDS length	794.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154271_2	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0154271_2	UniRef90	UniRef90_UPI001C018E19	ParB N-terminal domain-containing protein	NA
UHGV-0154271_2	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0154271_2	Structural annotation	PF02195, MF_02015, TIGR03764	NA	NA
UHGV-0154271_3	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0154271_3	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0154271_4	KOfam	K00012	UGDH, ugd; UDPglucose 6-dehydrogenase [EC:1.1.1.22]	NA
UHGV-0154271_4	PHROG	phrog_9148	UDP-glucose dehydrogenase	other
UHGV-0154271_4	UniRef90	UniRef90_I0ENZ2	UDP-glucose dehydrogenase	NA
UHGV-0154271_4	eggNOG-mapper	182217.HCW_07015	Belongs to the UDP-glucose GDP-mannose dehydrogenase family	NA
UHGV-0154271_4	Pfam	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	UDPG_MGDP_dh_N
UHGV-0154271_4	Pfam	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain	UDPG_MGDP_dh
UHGV-0154271_4	COG	COG1004	UDP-glucose 6-dehydrogenase	NA
UHGV-0154271_4	Structural annotation	PF00984, PF03446, MF_02029, NF041297, COG1004	NA	NA
UHGV-0154271_5	PHROG	phrog_16866	NA	unknown function
UHGV-0154271_5	UniRef90	UniRef90_A0A3N5U4X1	MgsA_C domain-containing protein	NA
UHGV-0154271_5	eggNOG-mapper	435590.BVU_2840	atpase related to the helicase subunit of the holliday junction resolvase	NA
UHGV-0154271_5	COG	COG2256	Replication-associated recombination protein RarA (DNA-dependent ATPase)	NA
UHGV-0154271_5	Structural annotation	PF12002	NA	NA
UHGV-0154271_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0154271_6	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0154271_6	UniRef90	UniRef90_A0A174R0Z2	Phage terminase, large subunit, PBSX family	NA
UHGV-0154271_6	eggNOG-mapper	1292035.H476_1019	Phage terminase large subunit	NA
UHGV-0154271_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0154271_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-0154271_7	UniRef90	UniRef90_A0A174R3E6	Phage portal protein, putative, A118 family	NA
UHGV-0154271_7	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0154271_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0154271_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0154271_9	UniRef90	UniRef90_A0A373PU57	Phage capsid protein	NA
UHGV-0154271_9	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0154271_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0154271_9	COG	COG2369	NA	NA
UHGV-0154271_9	Structural annotation	PF06152	NA	NA
UHGV-0154271_10	PHROG	phrog_1048	NA	unknown function
UHGV-0154271_10	UniRef90	UniRef90_A0A416GZ68	NA	NA
UHGV-0154271_10	eggNOG-mapper	411462.DORLON_00765	NA	NA
UHGV-0154271_10	Pfam	PF11195	NA	DUF2829
UHGV-0154271_10	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0154271_10	Structural annotation	PF11195	NA	NA
UHGV-0154271_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0154271_11	UniRef90	UniRef90_A0A174K280	Phage minor structural protein GP20	NA
UHGV-0154271_11	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-0154271_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0154271_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0154271_12	UniRef90	UniRef90_A0A391PAL7	Phage capsid protein	NA
UHGV-0154271_12	eggNOG-mapper	545697.HMPREF0216_02849	NA	NA
UHGV-0154271_12	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0154271_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0154271_14	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0154271_15	PHROG	phrog_3366	NA	unknown function
UHGV-0154271_15	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-0154271_15	Pfam	PF20536	NA	DUF6751
UHGV-0154271_15	Structural annotation	PF20536	NA	NA
UHGV-0154271_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0154271_16	UniRef90	UniRef90_UPI001D074B8B	minor capsid protein	NA
UHGV-0154271_16	eggNOG-mapper	1321782.HMPREF1986_02271	NA	NA
UHGV-0154271_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0154271_16	Structural annotation	PF11114	NA	NA
UHGV-0154271_17	PHROG	phrog_3266	tail completion	connector
UHGV-0154271_17	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0154271_17	eggNOG-mapper	1321782.HMPREF1986_02272	NA	NA
UHGV-0154271_17	Structural annotation	PF12691	NA	NA
UHGV-0154271_18	PHROG	phrog_3099	NA	unknown function
UHGV-0154271_18	UniRef90	UniRef90_C4IFF0	S-l_SbsC_C domain-containing protein	NA
UHGV-0154271_18	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0154271_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0154271_19	PHROG	phrog_4450	NA	unknown function
UHGV-0154271_19	UniRef90	UniRef90_A0A7M2RHR3	AP endonuclease	NA
UHGV-0154271_19	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-0154271_19	Pfam	PF20378	NA	DUF6673
UHGV-0154271_19	Structural annotation	PF20378	NA	NA
UHGV-0154271_20	PHROG	phrog_706	NA	unknown function
UHGV-0154271_20	UniRef90	UniRef90_A0A174K3F3	Bacteriophage Gp15 protein	NA
UHGV-0154271_20	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0154271_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0154271_20	Structural annotation	PF06854	NA	NA
UHGV-0154271_21	PHROG	phrog_19074	NA	unknown function
UHGV-0154271_21	UniRef90	UniRef90_A0A391P3M6	PhageMin_Tail domain-containing protein	NA
UHGV-0154271_21	eggNOG-mapper	1235792.C808_05377	Phage tail tape measure protein, TP901 family	NA
UHGV-0154271_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0154271_21	Pfam	PF04691	Apolipoprotein C-I (ApoC-1)	ApoC-I
UHGV-0154271_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0154271_21	COG	COG5283	Phage-related tail protein	NA
UHGV-0154271_21	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0154271_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0154271_22	UniRef90	UniRef90_D4J8M6	Phage tail protein	NA
UHGV-0154271_22	eggNOG-mapper	1235792.C808_05349	NA	NA
UHGV-0154271_22	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0154271_23	PHROG	phrog_9886	NA	unknown function
UHGV-0154271_23	UniRef90	UniRef90_A0A395V3B5	Prophage_tail domain-containing protein	NA
UHGV-0154271_23	eggNOG-mapper	1118055.CAGU01000013_gene766	Prophage endopeptidase tail	NA
UHGV-0154271_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0154271_23	COG	COG4926	Phage-related protein	NA
UHGV-0154271_23	Structural annotation	PF14594, PF04862, PF20843, TIGR01665, NF033675, COG4926, COG4266	NA	NA
UHGV-0154271_25	PHROG	phrog_11105	NA	unknown function
UHGV-0154271_27	PHROG	phrog_17147	NA	unknown function
UHGV-0154271_27	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-0154271_28	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0154271_28	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0154271_28	UniRef90	UniRef90_A0A395V130	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0154271_28	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0154271_28	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0154271_28	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0154271_28	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0154271_29	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0154271_29	UniRef90	UniRef90_UPI001C0F60E0	acyl carrier protein	NA
UHGV-0154271_29	eggNOG-mapper	608534.GCWU000341_02274	NA	NA
UHGV-0154271_29	Structural annotation	PF14301	NA	NA
UHGV-0154271_30	PHROG	phrog_20274	NA	unknown function
UHGV-0154271_30	UniRef90	UniRef90_A0A174K025	Predicted membrane protein	NA
UHGV-0154271_30	eggNOG-mapper	1298920.KI911353_gene4880	NA	NA
UHGV-0154271_30	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0154271_30	COG	COG4905	NA	NA
UHGV-0154271_30	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0154271_31	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-0154271_32	PHROG	phrog_9428	NA	unknown function
UHGV-0154271_32	UniRef90	UniRef90_A0A416GZL4	Serine/threonine protein kinase	NA
UHGV-0154271_32	eggNOG-mapper	411470.RUMGNA_00253	NA	NA
UHGV-0154271_33	PHROG	phrog_15303	NA	unknown function
UHGV-0154271_33	eggNOG-mapper	394503.Ccel_3271	NA	NA
UHGV-0154271_35	PHROG	phrog_20388	endolysin	lysis
UHGV-0154271_35	UniRef90	UniRef90_A0A415ZT48	Phage_lysozyme2 domain-containing protein	NA
UHGV-0154271_35	eggNOG-mapper	537007.BLAHAN_04260	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0154271_35	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0154271_35	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA