UHGV-0154375

Genome information

vOTU vOTU-022073

Genome length 23,667 bps

CDS count 46

Completeness 54.57% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154375
vOTU ID	vOTU-022073
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_470263
BioSample	SAMN06111992
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.67
Jumbo phage	No

Genome content
Genome length	23,667 bps
GC content	46.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.40%
Average CDS length	471.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154375_1	PHROG	phrog_1233	NA	unknown function
UHGV-0154375_1	eggNOG-mapper	445972.ANACOL_01876	NA	NA
UHGV-0154375_2	PHROG	phrog_34144	NA	unknown function
UHGV-0154375_2	eggNOG-mapper	742742.HMPREF9452_00763	NA	NA
UHGV-0154375_2	Structural annotation	PF20111	NA	NA
UHGV-0154375_3	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0154375_3	UniRef90	UniRef90_A0A1Y4MGE1	Phage_Mu_F domain-containing protein	NA
UHGV-0154375_3	eggNOG-mapper	1121289.JHVL01000082_gene1211	Phage Mu protein F like protein	NA
UHGV-0154375_3	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0154375_3	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0154375_3	COG	COG2369	NA	NA
UHGV-0154375_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-0154375_4	UniRef90	UniRef90_A0A1Q6KSP7	Phage portal protein	NA
UHGV-0154375_4	eggNOG-mapper	742740.HMPREF9474_02357	Phage portal protein, SPP1 family	NA
UHGV-0154375_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0154375_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0154375_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0154375_5	PHROG	phrog_10250	NA	unknown function
UHGV-0154375_5	UniRef90	UniRef90_A0A329UV81	PBSX family phage terminase large subunit	NA
UHGV-0154375_5	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-0154375_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0154375_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0154375_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0154375_5	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0154375_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0154375_6	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0154375_6	UniRef90	UniRef90_A0A329UVE7	Terminase small subunit	NA
UHGV-0154375_6	eggNOG-mapper	509191.AEDB02000023_gene3615	Terminase small subunit	NA
UHGV-0154375_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0154375_6	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0154375_6	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0154375_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0154375_8	eggNOG-mapper	320834.Q4ZDN6_9CAUD	NA	NA
UHGV-0154375_8	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0154375_8	Structural annotation	PF05263, TIGR01636, COG1595	NA	NA
UHGV-0154375_11	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0154375_11	UniRef90	UniRef90_A0A1V5XFC1	Virulence-associated protein E	NA
UHGV-0154375_11	eggNOG-mapper	1235793.C809_02292	Virulence-associated protein E	NA
UHGV-0154375_11	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0154375_11	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0154375_11	Structural annotation	PF05272, MF_00016, NF005477, COG5545	NA	NA
UHGV-0154375_12	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0154375_12	PHROG	phrog_11992	NA	unknown function
UHGV-0154375_12	UniRef90	UniRef90_A0A6N2TU46	DNA primase	NA
UHGV-0154375_12	eggNOG-mapper	1256908.HMPREF0373_03434	CHC2 zinc finger	NA
UHGV-0154375_12	PADLOC	drt-cluster192	DRT	DRT
UHGV-0154375_12	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0154375_12	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0154375_12	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0154375_13	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0154375_13	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0154375_13	eggNOG-mapper	1304866.K413DRAFT_0825	resolution of meiotic recombination intermediates	NA
UHGV-0154375_13	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0154375_13	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0154375_13	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0154375_14	PHROG	phrog_18107	NA	unknown function
UHGV-0154375_14	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0154375_14	Structural annotation	PF05037	NA	NA
UHGV-0154375_16	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0154375_16	UniRef90	UniRef90_A0A8J6P193	AAA family ATPase	NA
UHGV-0154375_16	eggNOG-mapper	1449050.JNLE01000005_gene3946	AAA domain	NA
UHGV-0154375_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0154375_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0154375_19	PHROG	phrog_18716	NA	unknown function
UHGV-0154375_19	UniRef90	UniRef90_A0A268IIR4	NA	NA
UHGV-0154375_19	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-0154375_19	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0154375_19	Structural annotation	PF18909	NA	NA
UHGV-0154375_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154375_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0154375_22	Structural annotation	PF13560, TIGR03070, COG1396	NA	NA
UHGV-0154375_23	PHROG	phrog_10714	NA	unknown function
UHGV-0154375_23	Structural annotation	PF15188	NA	NA
UHGV-0154375_27	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0154375_30	Pfam	PF04448	NA	DUF551
UHGV-0154375_31	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0154375_31	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0154375_31	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0154375_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0154375_31	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0154375_33	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0154375_33	PHROG	phrog_30550	NA	unknown function
UHGV-0154375_33	UniRef90	UniRef90_R6CIF0	Hydrolase_2 domain-containing protein	NA
UHGV-0154375_33	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0154375_33	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0154375_33	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0154375_34	KOfam	K05840	DRD5; dopamine receptor D5	NA
UHGV-0154375_34	PHROG	phrog_15773	NA	unknown function
UHGV-0154375_34	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0154375_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154375_35	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0154375_40	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0154375_40	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0154375_40	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0154375_41	UniRef90	UniRef90_UPI001D081DBD	XRE family transcriptional regulator	NA
UHGV-0154375_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0154375_41	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0154375_42	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0154375_42	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0154375_42	UniRef90	UniRef90_UPI0013796B8E	helix-turn-helix domain-containing protein	NA
UHGV-0154375_42	eggNOG-mapper	457421.CBFG_03225	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0154375_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154375_42	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0154375_42	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0154375_44	PHROG	phrog_1847	NA	unknown function
UHGV-0154375_44	UniRef90	UniRef90_R6IA31	T5orf172 domain	NA
UHGV-0154375_44	eggNOG-mapper	718252.FP2_06880	NA	NA
UHGV-0154375_44	Pfam	PF13250	NA	DUF4041
UHGV-0154375_44	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0154375_44	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0154375_45	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0154375_45	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0154375_45	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0154375_46	KOfam	K14059	int; integrase	NA
UHGV-0154375_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0154375_46	UniRef90	UniRef90_R6I1Y0	Site-specific recombinase XerD	NA
UHGV-0154375_46	eggNOG-mapper	246199.CUS_5913	Phage integrase family	NA
UHGV-0154375_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0154375_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0154375_46	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA