UHGV-0154438

Genome information

vOTU vOTU-022074

Genome length 39,860 bps

CDS count 76

Completeness 59.81% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154438
vOTU ID	vOTU-022074
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_495195
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.96
Jumbo phage	No

Genome content
Genome length	39,860 bps
GC content	55.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	86.30%
Average CDS length	455.49 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154438_1	PHROG	phrog_3583	head decoration	head and packaging
UHGV-0154438_1	UniRef90	UniRef90_A0A087B687	Bacteriophage lambda head decoration like-protein	NA
UHGV-0154438_1	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-0154438_2	UniRef90	UniRef90_A0A087B686	Putative phage protein gp5	NA
UHGV-0154438_2	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-0154438_3	PHROG	phrog_36668	NA	unknown function
UHGV-0154438_3	UniRef90	UniRef90_A0A7Y0EP42	NA	NA
UHGV-0154438_3	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-0154438_3	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0154438_4	PHROG	phrog_104	portal protein	head and packaging
UHGV-0154438_4	UniRef90	UniRef90_A0A1X3A1Q2	Portal protein	NA
UHGV-0154438_4	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-0154438_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0154438_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0154438_5	UniRef90	UniRef90_UPI001F0F6B49	phage terminase family protein	NA
UHGV-0154438_5	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-0154438_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0154438_5	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0154438_6	PHROG	phrog_226	minor tail protein	tail
UHGV-0154438_7	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154438_7	UniRef90	UniRef90_A0A5M9ZVQ2	NA	NA
UHGV-0154438_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0154438_7	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-0154438_8	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0154438_8	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154438_8	UniRef90	UniRef90_A0A0A7I6T1	HNHc domain-containing protein	NA
UHGV-0154438_8	eggNOG-mapper	1386089.N865_02065	HNH nucleases	NA
UHGV-0154438_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0154438_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0154438_18	eggNOG-mapper	445975.COLSTE_02319	NA	NA
UHGV-0154438_21	UniRef90	UniRef90_A0A1X2Z130	XRE family transcriptional regulator	NA
UHGV-0154438_21	eggNOG-mapper	401473.BDP_1637	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0154438_21	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0154438_21	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0154438_22	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0154438_22	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0154438_22	UniRef90	UniRef90_A0A1X2Z148	The helix-turn-helix motif	NA
UHGV-0154438_22	eggNOG-mapper	1435051.BMOU_1231	Helix-turn-helix XRE-family like proteins	NA
UHGV-0154438_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154438_22	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0154438_23	PHROG	phrog_14333	NA	unknown function
UHGV-0154438_23	UniRef90	UniRef90_A0A6I1GPA6	Transcriptional regulator	NA
UHGV-0154438_23	eggNOG-mapper	547043.BIFPSEUDO_03942	NA	NA
UHGV-0154438_23	Pfam	PF13711	NA	DUF4160
UHGV-0154438_23	Structural annotation	PF13711	NA	NA
UHGV-0154438_24	PHROG	phrog_37898	NA	unknown function
UHGV-0154438_24	UniRef90	UniRef90_A0A2U2MTW0	NA	NA
UHGV-0154438_24	eggNOG-mapper	702459.BBPR_0014	NA	NA
UHGV-0154438_24	Pfam	PF10387	NA	DUF2442
UHGV-0154438_28	PHROG	phrog_547	phosphoesterase	other
UHGV-0154438_28	UniRef90	UniRef90_A0A1X3A1P1	Metallophos domain-containing protein	NA
UHGV-0154438_28	eggNOG-mapper	1437600.JDUI01000008_gene1252	phosphoesterase or phosphohydrolase	NA
UHGV-0154438_28	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0154438_28	COG	COG4186	NA	NA
UHGV-0154438_28	Structural annotation	PF12850, MF_00575, NF003743, COG4186	NA	NA
UHGV-0154438_31	Structural annotation	PF20760	NA	NA
UHGV-0154438_35	PHROG	phrog_908	NA	unknown function
UHGV-0154438_35	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0154438_36	Structural annotation	PF13384	NA	NA
UHGV-0154438_39	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-0154438_39	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0154438_40	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0154438_40	UniRef90	UniRef90_A0A564VUK1	MazG domain-containing protein	NA
UHGV-0154438_40	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-0154438_40	Structural annotation	NF001611, COG1694	NA	NA
UHGV-0154438_42	UniRef90	UniRef90_UPI001076266F	transposase	NA
UHGV-0154438_42	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0154438_42	Structural annotation	PF01815	NA	NA
UHGV-0154438_44	PHROG	phrog_21331	NA	unknown function
UHGV-0154438_44	UniRef90	UniRef90_A0A0A7I3Q2	Peptidase	NA
UHGV-0154438_46	Structural annotation	TIGR03655	NA	NA
UHGV-0154438_48	PHROG	phrog_17662	NA	unknown function
UHGV-0154438_48	UniRef90	UniRef90_A0A1X2ZJJ5	Radical SAM domain-containing protein	NA
UHGV-0154438_48	eggNOG-mapper	642492.Clole_0962	NA	NA
UHGV-0154438_48	Structural annotation	MF_01225_B, TIGR04334, COG0535	NA	NA
UHGV-0154438_51	UniRef90	UniRef90_A0A0A7I2M5	Peptidase U32	NA
UHGV-0154438_52	PHROG	phrog_236	nucleotide kinase	other
UHGV-0154438_52	UniRef90	UniRef90_A0A1X2Z7L9	NA	NA
UHGV-0154438_52	eggNOG-mapper	1435051.BMOU_0788	NA	NA
UHGV-0154438_52	Pfam	PF11753	NA	DUF3310
UHGV-0154438_55	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0154438_55	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0154438_55	UniRef90	UniRef90_R6P7Q1	dUTPase domain-containing protein	NA
UHGV-0154438_55	eggNOG-mapper	1151126.AQYI01000003_gene554	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0154438_55	Pfam	PF00692	dUTPase	dUTPase
UHGV-0154438_55	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0154438_55	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0154438_55	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0154438_56	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0154438_56	UniRef90	UniRef90_A0A564VUG8	Oligoribonuclease	NA
UHGV-0154438_56	eggNOG-mapper	1688.BCUN_0417	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0154438_56	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0154438_56	Structural annotation	PF13361, MF_00045, NF003765, COG1949	NA	NA
UHGV-0154438_57	eggNOG-mapper	1394176.AWUO01000014_gene674	NA	NA
UHGV-0154438_58	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0154438_58	eggNOG-mapper	1437610.BREU_1410	NA	NA
UHGV-0154438_60	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0154438_60	UniRef90	UniRef90_A0A1X2ZJJ9	NA	NA
UHGV-0154438_60	eggNOG-mapper	1193128.A200_07809	NA	NA
UHGV-0154438_60	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0154438_61	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0154438_61	UniRef90	UniRef90_R6NTI6	Single-stranded DNA-binding protein	NA
UHGV-0154438_61	eggNOG-mapper	1680.BADO_1267	Single-strand binding protein family	NA
UHGV-0154438_61	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0154438_61	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0154438_61	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0154438_63	PHROG	phrog_2780	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0154438_63	UniRef90	UniRef90_A0A0A7I2H6	Phage recombination protein Bet	NA
UHGV-0154438_63	eggNOG-mapper	1435051.BMOU_0794	RecT family	NA
UHGV-0154438_63	Pfam	PF03837	RecT family	RecT
UHGV-0154438_63	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0154438_63	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0154438_63	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0154438_64	eggNOG-mapper	78346.BRUM_0411	NA	NA
UHGV-0154438_65	KOfam	K04074	divIVA; cell division initiation protein	NA
UHGV-0154438_65	UniRef90	UniRef90_A0A564VUN2	Cell wall synthesis protein Wag31	NA
UHGV-0154438_65	Pfam	PF05103	DivIVA protein	DivIVA
UHGV-0154438_65	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-0154438_65	COG	COG1566	Multidrug resistance efflux pump EmrA	NA
UHGV-0154438_65	Structural annotation	PF05103, MF_02011, NF010725	NA	NA
UHGV-0154438_68	PHROG	phrog_774	NA	unknown function
UHGV-0154438_70	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0154438_70	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0154438_70	UniRef90	UniRef90_A0A564VUU0	Bro-N domain-containing protein	NA
UHGV-0154438_70	eggNOG-mapper	78345.BMERY_0904	BRO family, N-terminal domain	NA
UHGV-0154438_70	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0154438_70	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0154438_70	COG	COG3617	Prophage antirepressor	NA
UHGV-0154438_70	Structural annotation	PF03374, PF10547, TIGR02681, COG3617	NA	NA
UHGV-0154438_71	KOfam	K15352	pipB2; secreted effector protein PipB2	NA
UHGV-0154438_71	PHROG	phrog_9562	NA	unknown function
UHGV-0154438_71	UniRef90	UniRef90_UPI001CFB6FF2	NA	NA
UHGV-0154438_71	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0154438_71	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0154438_71	Pfam	PF19062	NA	DUF5758
UHGV-0154438_71	COG	COG1357	NA	NA
UHGV-0154438_71	Structural annotation	PF19062, PF13599, NF000420	NA	NA
UHGV-0154438_72	PHROG	phrog_9103	transcriptional repressor	transcription regulation
UHGV-0154438_72	UniRef90	UniRef90_A0A0A7I2H4	XRE family transcriptional regulator	NA
UHGV-0154438_72	eggNOG-mapper	1151126.AQYI01000007_gene1567	NA	NA
UHGV-0154438_72	Structural annotation	PF20432, NF000090, COG1476	NA	NA
UHGV-0154438_73	PHROG	phrog_16278	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0154438_73	UniRef90	UniRef90_A0A1X2ZGN8	DNA-binding protein	NA
UHGV-0154438_73	eggNOG-mapper	1437605.BACT_1107	NA	NA
UHGV-0154438_73	Structural annotation	PF13560, MF_00535, NF041677, COG3655	NA	NA
UHGV-0154438_74	PHROG	phrog_87	metallo-protease	other
UHGV-0154438_74	UniRef90	UniRef90_A0A1X2ZJP7	Peptidase_M78 domain-containing protein	NA
UHGV-0154438_74	eggNOG-mapper	78346.BRUM_0422	NA	NA
UHGV-0154438_74	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0154438_74	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0154438_76	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0154438_76	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0154438_76	UniRef90	UniRef90_A0A564VW46	Thymidylate synthase	NA
UHGV-0154438_76	eggNOG-mapper	1240349.ANGC01000001_gene2516	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	NA
UHGV-0154438_76	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0154438_76	NCBIFam	NF002497.0	thymidylate synthase	NA
UHGV-0154438_76	COG	COG0207	Thymidylate synthase	NA
UHGV-0154438_76	HAMAP	MF_00008	Thymidylate synthase [thyA]	NA
UHGV-0154438_76	Structural annotation	PF00303, MF_00008, NF002497, COG0207	NA	NA