UHGV-0154448

Genome information

Genome length 41,010 bps

CDS count 70

Completeness 99.90% (high-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154448
vOTU ID	vOTU-060822
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_484107
BioSample	SAMN06110216
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.73
Jumbo phage	No

Genome content
Genome length	41,010 bps
GC content	58.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	92.47%
Average CDS length	544.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154448_1	KOfam	K14059	int; integrase	NA
UHGV-0154448_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0154448_1	UniRef90	UniRef90_A0A173ZVZ5	Phage integrase family protein	NA
UHGV-0154448_1	eggNOG-mapper	1435051.BMOU_0751	Phage integrase family	NA
UHGV-0154448_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0154448_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0154448_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0154448_1	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0154448_4	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0154448_4	UniRef90	UniRef90_A0A2K9BDN3	Phage associated protein	NA
UHGV-0154448_4	eggNOG-mapper	78346.BRUM_0375	Transcriptional regulator	NA
UHGV-0154448_4	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0154448_4	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0154448_5	UniRef90	UniRef90_D4BRZ3	PBECR4 domain-containing protein	NA
UHGV-0154448_5	eggNOG-mapper	401473.BDP_0967	NA	NA
UHGV-0154448_5	Pfam	PF18813	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	PBECR4
UHGV-0154448_7	UniRef90	UniRef90_A0A0A7I2K7	DoxX	NA
UHGV-0154448_7	eggNOG-mapper	1120979.ATVB01000037_gene1493	NA	NA
UHGV-0154448_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0154448_8	PHROG	phrog_14048	endolysin	lysis
UHGV-0154448_8	UniRef90	UniRef90_A0A564VN80	N-acetylmuramoyl-L-alanine amidase A	NA
UHGV-0154448_8	eggNOG-mapper	158787.BSCA_1068	Ami_2	NA
UHGV-0154448_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0154448_8	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0154448_8	Structural annotation	PF08460, PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0154448_9	UniRef90	UniRef90_A0A267WIZ8	Histidine kinase	NA
UHGV-0154448_13	UniRef90	UniRef90_A0A1L5L3T6	MurA: UDP-N-acetylglucosamine (Fragment)	NA
UHGV-0154448_13	Structural annotation	PF01105, NF033147	NA	NA
UHGV-0154448_16	PHROG	phrog_28754	NA	unknown function
UHGV-0154448_16	UniRef90	UniRef90_A0A174BVV4	Tail type measure protein	NA
UHGV-0154448_16	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0154448_16	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0154448_17	KOfam	K14059	int; integrase	NA
UHGV-0154448_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0154448_17	UniRef90	UniRef90_A0A173YYH4	Phage integrase	NA
UHGV-0154448_17	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-0154448_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0154448_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0154448_17	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0154448_18	eggNOG-mapper	1435051.BMOU_0220	NA	NA
UHGV-0154448_20	PHROG	phrog_9994	NA	unknown function
UHGV-0154448_20	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0154448_20	Structural annotation	PF20747, PF08931	NA	NA
UHGV-0154448_22	PHROG	phrog_538	minor tail protein	tail
UHGV-0154448_22	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0154448_22	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0154448_22	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0154448_23	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0154448_23	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0154448_24	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0154448_24	UniRef90	UniRef90_A0A072MS24	PhageMin_Tail domain-containing protein	NA
UHGV-0154448_24	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0154448_24	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0154448_24	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0154448_24	COG	COG5283	Phage-related tail protein	NA
UHGV-0154448_24	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0154448_25	UniRef90	UniRef90_A0A1X2YXV5	Terminase	NA
UHGV-0154448_25	eggNOG-mapper	398513.BBNG_00857	NA	NA
UHGV-0154448_26	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-0154448_26	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-0154448_26	Structural annotation	PF08890	NA	NA
UHGV-0154448_27	PHROG	phrog_2491	major tail protein	tail
UHGV-0154448_27	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-0154448_27	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0154448_27	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-0154448_28	UniRef90	UniRef90_A0A3E5HKK5	Transcriptional regulator	NA
UHGV-0154448_28	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0154448_28	Structural annotation	PF06141	NA	NA
UHGV-0154448_29	PHROG	phrog_19109	NA	unknown function
UHGV-0154448_29	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0154448_29	Structural annotation	TIGR01725	NA	NA
UHGV-0154448_30	PHROG	phrog_13779	NA	unknown function
UHGV-0154448_30	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-0154448_30	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0154448_30	Pfam	PF19586	NA	DUF6093
UHGV-0154448_30	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0154448_31	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0154448_31	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0154448_31	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0154448_31	Pfam	PF09355	NA	Phage_Gp19
UHGV-0154448_31	Structural annotation	PF09355	NA	NA
UHGV-0154448_32	UniRef90	UniRef90_I3BBX9	Head fiber domain protein	NA
UHGV-0154448_33	PHROG	phrog_15682	NA	unknown function
UHGV-0154448_34	PHROG	phrog_212	major head protein	head and packaging
UHGV-0154448_34	UniRef90	UniRef90_A0A430FUD7	Phage capsid protein	NA
UHGV-0154448_34	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-0154448_34	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0154448_35	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0154448_35	UniRef90	UniRef90_UPI001115A562	NA	NA
UHGV-0154448_35	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-0154448_36	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0154448_36	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0154448_37	PHROG	phrog_104	portal protein	head and packaging
UHGV-0154448_37	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0154448_37	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0154448_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0154448_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0154448_38	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0154448_38	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0154448_38	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0154448_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0154448_38	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0154448_40	UniRef90	UniRef90_A0A3P1S2I5	NA	NA
UHGV-0154448_40	eggNOG-mapper	1680.BADO_1246	NA	NA
UHGV-0154448_41	PHROG	phrog_8680	NA	unknown function
UHGV-0154448_41	UniRef90	UniRef90_A0A087DRQ2	ParB-like protein	NA
UHGV-0154448_41	eggNOG-mapper	1680.BADO_1246	NA	NA
UHGV-0154448_41	Pfam	PF14386	NA	DUF4417
UHGV-0154448_42	PHROG	phrog_226	minor tail protein	tail
UHGV-0154448_42	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0154448_44	PHROG	phrog_908	NA	unknown function
UHGV-0154448_44	UniRef90	UniRef90_A0A3E5HJT8	PhnA protein	NA
UHGV-0154448_44	eggNOG-mapper	78346.BRUM_0402	NA	NA
UHGV-0154448_44	Structural annotation	COG0789	NA	NA
UHGV-0154448_45	UniRef90	UniRef90_A0A412K9M9	Antitoxin	NA
UHGV-0154448_45	eggNOG-mapper	78346.BRUM_0403	NA	NA
UHGV-0154448_47	UniRef90	UniRef90_UPI001CFD288C	GTP-binding protein	NA
UHGV-0154448_48	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0154448_48	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-0154448_48	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0154448_49	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0154448_49	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0154448_49	UniRef90	UniRef90_UPI0018AA9B87	N-6 DNA methylase	NA
UHGV-0154448_49	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0154448_49	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0154448_49	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0154448_49	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0154448_49	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0154448_50	UniRef90	UniRef90_UPI001A956D64	zinc-ribbon domain-containing protein	NA
UHGV-0154448_51	UniRef90	UniRef90_A0A564VVG1	TetR_C_3 domain-containing protein	NA
UHGV-0154448_52	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0154448_52	UniRef90	UniRef90_A0A072N4W1	MazG domain-containing protein	NA
UHGV-0154448_52	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-0154448_52	Structural annotation	NF001611, COG1694	NA	NA
UHGV-0154448_53	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0154448_53	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0154448_53	UniRef90	UniRef90_A0A087BHA1	Gp53 family protein	NA
UHGV-0154448_53	eggNOG-mapper	78345.BMERY_0895	NA	NA
UHGV-0154448_53	Structural annotation	NF007305, COG4570	NA	NA
UHGV-0154448_54	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0154448_54	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0154448_54	UniRef90	UniRef90_A0A087D541	Single-stranded DNA-binding protein	NA
UHGV-0154448_54	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-0154448_54	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0154448_54	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0154448_54	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0154448_54	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0154448_54	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0154448_55	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0154448_55	UniRef90	UniRef90_A0A086Z1J6	Putative gp43	NA
UHGV-0154448_55	eggNOG-mapper	78346.BRUM_0410	NA	NA
UHGV-0154448_55	Structural annotation	PF03837, TIGR01913	NA	NA
UHGV-0154448_56	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154448_56	UniRef90	UniRef90_UPI0018AA0D1F	YqaJ viral recombinase family protein	NA
UHGV-0154448_56	eggNOG-mapper	1341695.BBOMB_1057	YqaJ-like viral recombinase domain	NA
UHGV-0154448_56	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0154448_56	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0154448_56	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0154448_56	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0154448_57	UniRef90	UniRef90_UPI00080BF96B	molecular chaperone GrpE	NA
UHGV-0154448_57	Structural annotation	PF01047	NA	NA
UHGV-0154448_59	UniRef90	UniRef90_A0A8B2Z9G9	DNA-binding protein	NA
UHGV-0154448_59	eggNOG-mapper	558173.CDOO_03875	Helix-turn-helix domain	NA
UHGV-0154448_59	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0154448_60	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0154448_60	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0154448_60	UniRef90	UniRef90_A0A2R4G2K9	Phage antirepressor Ant	NA
UHGV-0154448_60	eggNOG-mapper	78346.BRUM_0415	BRO family, N-terminal domain	NA
UHGV-0154448_60	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0154448_60	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0154448_60	COG	COG3617	Prophage antirepressor	NA
UHGV-0154448_60	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0154448_61	eggNOG-mapper	398513.BBNG_00824	NA	NA
UHGV-0154448_62	eggNOG-mapper	78346.BRUM_0417	NA	NA
UHGV-0154448_62	Structural annotation	PF12989	NA	NA
UHGV-0154448_65	UniRef90	UniRef90_A0A072MRY9	BetR domain-containing protein	NA
UHGV-0154448_65	eggNOG-mapper	78345.BMERY_0907	NA	NA
UHGV-0154448_65	Structural annotation	PF08667, MF_00535, NF041951, COG3093	NA	NA
UHGV-0154448_66	UniRef90	UniRef90_A0A072N4U2	Anhydro-N-acetylmuramyl-tripeptide amidase	NA
UHGV-0154448_67	UniRef90	UniRef90_D4BRS9	HTH cro/C1-type domain-containing protein	NA
UHGV-0154448_67	eggNOG-mapper	1435051.BMOU_0746	NA	NA
UHGV-0154448_67	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0154448_67	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0154448_68	PHROG	phrog_87	metallo-protease	other
UHGV-0154448_68	UniRef90	UniRef90_UPI001CF991EA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0154448_68	eggNOG-mapper	1435051.BMOU_0747	NA	NA
UHGV-0154448_68	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0154448_68	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0154448_69	eggNOG-mapper	1435051.BMOU_0749	NA	NA
UHGV-0154448_70	UniRef90	UniRef90_A7A599	Outer membrane insertion signal domain protein	NA
UHGV-0154448_70	eggNOG-mapper	1435051.BMOU_0750	NA	NA