UHGV-0154449

Genome information

Genome length 37,006 bps

CDS count 54

Completeness 99.91% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154449
vOTU ID	vOTU-060821
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_453418
BioSample	SAMN05971486
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.68
Jumbo phage	No

Genome content
Genome length	37,006 bps
GC content	50.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.57%
Average CDS length	631.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154449_1	KOfam	K11249	eamB; cysteine/O-acetylserine efflux protein	NA
UHGV-0154449_1	PHROG	phrog_16154	NA	unknown function
UHGV-0154449_1	UniRef90	UniRef90_A0A8G0RK96	LysE family transporter	NA
UHGV-0154449_1	eggNOG-mapper	588581.Cpap_1187	PFAM Lysine exporter protein (LYSE YGGA)	NA
UHGV-0154449_1	Pfam	PF01810	LysE type translocator	LysE
UHGV-0154449_1	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0154449_2	KOfam	K14059	int; integrase	NA
UHGV-0154449_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0154449_2	UniRef90	UniRef90_UPI0004718C3D	site-specific integrase	NA
UHGV-0154449_2	eggNOG-mapper	610130.Closa_1360	Belongs to the 'phage' integrase family	NA
UHGV-0154449_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0154449_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0154449_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0154449_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0154449_4	PHROG	phrog_87	metallo-protease	other
UHGV-0154449_4	UniRef90	UniRef90_UPI001E2890E0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0154449_4	eggNOG-mapper	411461.DORFOR_00033	IrrE N-terminal-like domain	NA
UHGV-0154449_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0154449_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0154449_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0154449_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0154449_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0154449_5	UniRef90	UniRef90_A0A6M1WLJ9	Helix-turn-helix transcriptional regulator	NA
UHGV-0154449_5	eggNOG-mapper	1540257.JQMW01000013_gene775	Helix-turn-helix XRE-family like proteins	NA
UHGV-0154449_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154449_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0154449_6	UniRef90	UniRef90_A0A6N9LK73	XRE family transcriptional regulator	NA
UHGV-0154449_6	eggNOG-mapper	887325.HMPREF0381_0113	NA	NA
UHGV-0154449_6	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0154449_11	PHROG	phrog_22695	NA	unknown function
UHGV-0154449_11	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-0154449_12	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154449_12	UniRef90	UniRef90_UPI00156DD5A2	NA	NA
UHGV-0154449_12	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-0154449_12	Pfam	PF10926	NA	DUF2800
UHGV-0154449_12	COG	COG2887	RecB family exonuclease	NA
UHGV-0154449_12	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0154449_13	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0154449_13	UniRef90	UniRef90_UPI0015D1A9B3	NA	NA
UHGV-0154449_13	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-0154449_13	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0154449_13	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0154449_14	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0154449_14	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0154449_14	UniRef90	UniRef90_UPI0015D23423	DNA polymerase	NA
UHGV-0154449_14	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-0154449_14	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0154449_14	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0154449_14	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0154449_15	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0154449_15	UniRef90	UniRef90_UPI001570B731	virulence-associated E family protein	NA
UHGV-0154449_15	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-0154449_15	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0154449_15	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0154449_15	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0154449_16	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154449_16	UniRef90	UniRef90_UPI00156E1B55	VRR-NUC domain-containing protein	NA
UHGV-0154449_16	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-0154449_16	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0154449_16	Structural annotation	PF01870, MF_01490, NF002585, COG1591	NA	NA
UHGV-0154449_17	UniRef90	UniRef90_A0A174K666	DNA/RNA helicase, superfamily II, SNF2 family	NA
UHGV-0154449_17	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0154449_17	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0154449_18	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0154449_18	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0154449_18	UniRef90	UniRef90_UPI0015701693	DEAD/DEAH box helicase	NA
UHGV-0154449_18	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0154449_18	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0154449_18	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0154449_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0154449_18	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0154449_18	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0154449_19	PHROG	phrog_5781	NA	unknown function
UHGV-0154449_19	UniRef90	UniRef90_A0A3R6XYD6	NA	NA
UHGV-0154449_19	eggNOG-mapper	1321782.HMPREF1986_02257	NA	NA
UHGV-0154449_19	Pfam	PF14359	NA	DUF4406
UHGV-0154449_26	AcrCatalog	cluster_12858	NA	NA
UHGV-0154449_27	PHROG	phrog_7024	NA	unknown function
UHGV-0154449_27	eggNOG-mapper	1408437.JNJN01000033_gene2207	NA	NA
UHGV-0154449_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0154449_28	UniRef90	UniRef90_UPI001AA18958	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0154449_28	eggNOG-mapper	411462.DORLON_00800	NA	NA
UHGV-0154449_28	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0154449_28	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0154449_29	eggNOG-mapper	1435051.BMOU_0730	NA	NA
UHGV-0154449_30	PHROG	phrog_2412	NA	unknown function
UHGV-0154449_30	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0154449_30	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0154449_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0154449_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0154449_31	UniRef90	UniRef90_UPI001EE8F57D	PBSX family phage terminase large subunit	NA
UHGV-0154449_31	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0154449_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0154449_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0154449_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0154449_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0154449_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0154449_32	UniRef90	UniRef90_UPI000C79119B	phage portal protein	NA
UHGV-0154449_32	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0154449_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0154449_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0154449_33	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0154449_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0154449_33	UniRef90	UniRef90_UPI00191552C0	phage minor capsid protein	NA
UHGV-0154449_33	eggNOG-mapper	1295642.H839_08294	Phage minor capsid protein 2	NA
UHGV-0154449_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0154449_33	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0154449_33	COG	COG2369	NA	NA
UHGV-0154449_35	KOfam	K07584	NA	NA
UHGV-0154449_35	PHROG	phrog_4478	peptidase	other
UHGV-0154449_35	UniRef90	UniRef90_UPI0019157016	ribosomal-processing cysteine protease Prp	NA
UHGV-0154449_35	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0154449_35	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0154449_35	COG	COG2868	NA	NA
UHGV-0154449_35	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0154449_36	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0154449_37	PHROG	phrog_267	major head protein	head and packaging
UHGV-0154449_37	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0154449_37	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0154449_37	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0154449_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0154449_38	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0154449_38	eggNOG-mapper	665959.HMPREF1013_00198	NA	NA
UHGV-0154449_39	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0154449_39	UniRef90	UniRef90_UPI0003FC0B4B	putative minor capsid protein	NA
UHGV-0154449_39	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-0154449_39	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0154449_39	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0154449_39	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0154449_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0154449_40	UniRef90	UniRef90_UPI000470876F	minor capsid protein	NA
UHGV-0154449_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0154449_40	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0154449_41	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0154449_41	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0154449_41	Structural annotation	PF12691	NA	NA
UHGV-0154449_42	PHROG	phrog_820	major tail protein	tail
UHGV-0154449_42	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0154449_42	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0154449_42	COG	COG5492	NA	NA
UHGV-0154449_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0154449_43	Structural annotation	PF10666	NA	NA
UHGV-0154449_44	PHROG	phrog_706	NA	unknown function
UHGV-0154449_44	UniRef90	UniRef90_UPI0009DF23C8	Gp15 family bacteriophage protein	NA
UHGV-0154449_44	eggNOG-mapper	1238184.CM001792_gene103	Bacteriophage Gp15 protein	NA
UHGV-0154449_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0154449_44	Structural annotation	PF06854	NA	NA
UHGV-0154449_45	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0154449_45	UniRef90	UniRef90_UPI001D07B0FF	phage tail tape measure protein	NA
UHGV-0154449_45	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-0154449_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0154449_45	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0154449_45	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0154449_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0154449_46	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0154449_46	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0154449_46	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0154449_47	PHROG	phrog_538	minor tail protein	tail
UHGV-0154449_47	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0154449_47	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0154449_47	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0154449_47	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0154449_48	PHROG	phrog_9994	NA	unknown function
UHGV-0154449_48	UniRef90	UniRef90_UPI000C7605CE	H-type lectin domain-containing protein	NA
UHGV-0154449_48	eggNOG-mapper	411468.CLOSCI_00275	NA	NA
UHGV-0154449_48	Structural annotation	PF20747, PF17900	NA	NA
UHGV-0154449_49	PHROG	phrog_12931	NA	unknown function
UHGV-0154449_49	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-0154449_50	PHROG	phrog_5056	NA	unknown function
UHGV-0154449_50	eggNOG-mapper	1033738.CAEP01000136_gene2875	NA	NA
UHGV-0154449_50	Structural annotation	NF040910	NA	NA
UHGV-0154449_51	PHROG	phrog_5056	NA	unknown function
UHGV-0154449_51	eggNOG-mapper	665950.HMPREF1025_02516	NA	NA
UHGV-0154449_51	Structural annotation	NF040910	NA	NA
UHGV-0154449_52	PHROG	phrog_4105	NA	unknown function
UHGV-0154449_52	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0154449_53	PHROG	phrog_18218	NA	unknown function
UHGV-0154449_53	UniRef90	UniRef90_A0A396PU34	Ribonuclease	NA
UHGV-0154449_53	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0154449_53	Structural annotation	PF06946	NA	NA
UHGV-0154449_54	PHROG	phrog_14030	NA	unknown function
UHGV-0154449_54	UniRef90	UniRef90_A0A1Q6KNA3	SH3b domain-containing protein	NA
UHGV-0154449_54	eggNOG-mapper	742741.HMPREF9475_00446	NA	NA
UHGV-0154449_54	Structural annotation	PF18342, NF041850, COG3807	NA	NA