UHGV-0154461

Genome information

Genome length 30,975 bps

CDS count 53

Completeness 88.71% (medium-quality)

geNomad score 0.9608

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154461
vOTU ID	vOTU-018199
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_453417
BioSample	SAMN05971486
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9608
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.68
Jumbo phage	No

Genome content
Genome length	30,975 bps
GC content	28.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	87.40%
Average CDS length	514.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154461_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0154461_2	PHROG	phrog_670	endolysin	lysis
UHGV-0154461_2	UniRef90	UniRef90_A0A7X9B8R6	SH3 domain-containing protein	NA
UHGV-0154461_2	eggNOG-mapper	748727.CLJU_c03740	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0154461_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0154461_2	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0154461_2	COG	COG3103	NA	NA
UHGV-0154461_2	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-0154461_3	PHROG	phrog_199	holin	lysis
UHGV-0154461_3	UniRef90	UniRef90_UPI001E61EBDA	phage holin family protein	NA
UHGV-0154461_3	eggNOG-mapper	536233.CLO_1583	toxin secretion phage lysis holin	NA
UHGV-0154461_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0154461_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0154461_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0154461_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0154461_4	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0154461_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0154461_4	UniRef90	UniRef90_C4II13	Phage integrase	NA
UHGV-0154461_4	eggNOG-mapper	632245.CLP_2897	Belongs to the 'phage' integrase family	NA
UHGV-0154461_4	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0154461_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0154461_4	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0154461_4	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0154461_6	PHROG	phrog_3558	tail protein	tail
UHGV-0154461_6	UniRef90	UniRef90_UPI0018A9A0AF	phage tail protein	NA
UHGV-0154461_6	eggNOG-mapper	1414720.CBYM010000040_gene1657	Phage minor structural protein, N-terminal	NA
UHGV-0154461_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0154461_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0154461_6	COG	COG4926	Phage-related protein	NA
UHGV-0154461_6	Structural annotation	PF06605, PF09931, TIGR01665, COG4926	NA	NA
UHGV-0154461_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0154461_7	UniRef90	UniRef90_UPI0004ACC375	phage tail family protein	NA
UHGV-0154461_7	eggNOG-mapper	1414720.CBYM010000040_gene1656	PFAM Phage tail protein	NA
UHGV-0154461_7	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0154461_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0154461_7	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0154461_8	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0154461_8	UniRef90	UniRef90_UPI000F057568	phage tail tape measure protein	NA
UHGV-0154461_8	eggNOG-mapper	552396.HMPREF0863_01444	Phage tail tape measure protein, TP901 family	NA
UHGV-0154461_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0154461_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0154461_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0154461_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0154461_9	eggNOG-mapper	1414720.CBYM010000040_gene1654	NA	NA
UHGV-0154461_10	PHROG	phrog_1021	NA	unknown function
UHGV-0154461_10	eggNOG-mapper	398512.JQKC01000009_gene459	NA	NA
UHGV-0154461_11	PHROG	phrog_885	major tail protein	tail
UHGV-0154461_11	eggNOG-mapper	1414720.CBYM010000040_gene1652	NA	NA
UHGV-0154461_11	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0154461_12	PHROG	phrog_957	head protein	head and packaging
UHGV-0154461_12	UniRef90	UniRef90_UPI001C0F6033	NA	NA
UHGV-0154461_12	eggNOG-mapper	1414720.CBYM010000040_gene1651	NA	NA
UHGV-0154461_12	Pfam	PF11367	NA	DUF3168
UHGV-0154461_12	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0154461_13	UniRef90	UniRef90_UPI000F05B9C3	HK97 gp10 family phage protein	NA
UHGV-0154461_13	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-0154461_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0154461_14	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0154461_14	UniRef90	UniRef90_UPI000F066148	phage head closure protein	NA
UHGV-0154461_14	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0154461_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0154461_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0154461_15	PHROG	phrog_5223	neck protein	connector
UHGV-0154461_15	UniRef90	UniRef90_UPI000F062078	head-tail connector protein	NA
UHGV-0154461_15	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0154461_15	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0154461_15	Structural annotation	TIGR01560	NA	NA
UHGV-0154461_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0154461_16	UniRef90	UniRef90_C2PQK7	Phage major capsid protein	NA
UHGV-0154461_16	eggNOG-mapper	315730.BcerKBAB4_3428	Phage capsid family	NA
UHGV-0154461_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0154461_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0154461_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0154461_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0154461_17	KOfam	K06904	NA	NA
UHGV-0154461_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0154461_17	UniRef90	UniRef90_A0A1S8PRR3	Caudovirus prohead protease	NA
UHGV-0154461_17	eggNOG-mapper	290402.Cbei_0908	Phage prohead protease, HK97 family	NA
UHGV-0154461_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0154461_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0154461_17	COG	COG3740	Phage head maturation protease	NA
UHGV-0154461_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0154461_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0154461_18	UniRef90	UniRef90_A0A162UWL2	Phage portal protein	NA
UHGV-0154461_18	eggNOG-mapper	1443122.Z958_05975	Portal protein	NA
UHGV-0154461_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0154461_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0154461_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0154461_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0154461_19	UniRef90	UniRef90_UPI000F049817	terminase large subunit	NA
UHGV-0154461_19	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-0154461_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0154461_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0154461_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0154461_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0154461_20	PHROG	phrog_1066	NA	unknown function
UHGV-0154461_20	eggNOG-mapper	1280689.AUJC01000011_gene1517	NA	NA
UHGV-0154461_20	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0154461_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0154461_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154461_21	UniRef90	UniRef90_UPI000F06AC0F	HNH endonuclease	NA
UHGV-0154461_21	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-0154461_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0154461_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0154461_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0154461_22	PHROG	phrog_216	integrase	integration and excision
UHGV-0154461_22	UniRef90	UniRef90_UPI001967951F	tyrosine-type recombinase/integrase	NA
UHGV-0154461_22	eggNOG-mapper	1414720.CBYM010000040_gene1640	Integrase	NA
UHGV-0154461_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0154461_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0154461_22	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0154461_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0154461_24	UniRef90	UniRef90_A0A1C5VH71	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0154461_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0154461_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0154461_25	UniRef90	UniRef90_A0A371ISI1	Single-stranded DNA-binding protein	NA
UHGV-0154461_25	eggNOG-mapper	1301100.HG529418_gene3025	Single-stranded DNA-binding protein	NA
UHGV-0154461_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0154461_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0154461_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0154461_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0154461_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0154461_31	eggNOG-mapper	1499683.CCFF01000014_gene3923	NA	NA
UHGV-0154461_38	UniRef90	UniRef90_UPI00189BFCCC	Spo0E family sporulation regulatory protein-aspartic acid phosphatase	NA
UHGV-0154461_40	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0154461_40	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0154461_40	UniRef90	UniRef90_UPI001A9AABC1	ATP-binding protein	NA
UHGV-0154461_40	eggNOG-mapper	1301100.HG529272_gene1705	PFAM IstB-like ATP binding protein	NA
UHGV-0154461_40	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0154461_40	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0154461_40	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0154461_41	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0154461_41	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0154461_41	UniRef90	UniRef90_UPI0014593643	DnaD domain protein	NA
UHGV-0154461_41	eggNOG-mapper	1151292.QEW_4383	NA	NA
UHGV-0154461_41	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0154461_41	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0154461_44	eggNOG-mapper	1487921.DP68_18575	NA	NA
UHGV-0154461_44	Structural annotation	PF05171, TIGR04108, COG3721	NA	NA
UHGV-0154461_45	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0154461_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0154461_45	UniRef90	UniRef90_UPI000464546A	helix-turn-helix domain-containing protein	NA
UHGV-0154461_45	eggNOG-mapper	1408823.AXUS01000025_gene2659	sequence-specific DNA binding	NA
UHGV-0154461_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0154461_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0154461_45	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0154461_46	PHROG	phrog_6996	NA	unknown function
UHGV-0154461_48	UniRef90	UniRef90_UPI001F2DA01C	helix-turn-helix transcriptional regulator	NA
UHGV-0154461_48	eggNOG-mapper	272563.CD630_09071	sequence-specific DNA binding	NA
UHGV-0154461_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154461_48	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0154461_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0154461_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0154461_49	UniRef90	UniRef90_W1Y8E1	XRE family transcriptional regulator	NA
UHGV-0154461_49	eggNOG-mapper	1582149.A0A0A8WJ60_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-0154461_49	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0154461_49	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0154461_50	PHROG	phrog_87	metallo-protease	other
UHGV-0154461_50	UniRef90	UniRef90_R5X8T6	Putative phage-related protein	NA
UHGV-0154461_50	eggNOG-mapper	272563.CD630_13590	IrrE N-terminal-like domain	NA
UHGV-0154461_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0154461_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0154461_50	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0154461_51	eggNOG-mapper	189426.PODO_11980	NA	NA
UHGV-0154461_53	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0154461_53	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0154461_53	UniRef90	UniRef90_A0A5P3XF25	FtsK domain-containing protein	NA
UHGV-0154461_53	eggNOG-mapper	412419.BDU_260	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0154461_53	PADLOC	SspH_00004	SspH	SSP
UHGV-0154461_53	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0154461_53	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0154461_53	Structural annotation	PF01580, MF_01836, NF041214, COG0433	NA	NA