UHGV-0154516

Genome information

Genome length 30,409 bps

CDS count 46

Completeness 71.36% (medium-quality)

geNomad score 0.9639

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154516
vOTU ID	vOTU-016897
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_474840
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9639
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.43
Jumbo phage	No

Genome content
Genome length	30,409 bps
GC content	49.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	89.14%
Average CDS length	592.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154516_2	eggNOG-mapper	665956.HMPREF1032_03261	NA	NA
UHGV-0154516_3	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0154516_3	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-0154516_3	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0154516_4	PHROG	phrog_13046	NA	unknown function
UHGV-0154516_4	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0154516_4	Structural annotation	PF20387	NA	NA
UHGV-0154516_5	PHROG	phrog_371	major head protein	head and packaging
UHGV-0154516_5	UniRef90	UniRef90_R5AAY6	Mu-like_gpT domain-containing protein	NA
UHGV-0154516_5	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0154516_5	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0154516_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0154516_6	PHROG	phrog_24113	NA	unknown function
UHGV-0154516_6	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0154516_7	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0154516_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-0154516_10	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0154516_10	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0154516_11	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0154516_11	PHROG	phrog_216	integrase	integration and excision
UHGV-0154516_11	UniRef90	UniRef90_R5AM78	Integrase family protein	NA
UHGV-0154516_11	eggNOG-mapper	97138.C820_00621	integrase family	NA
UHGV-0154516_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0154516_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0154516_11	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0154516_12	PHROG	phrog_24361	terminase	head and packaging
UHGV-0154516_12	UniRef90	UniRef90_R5AHR8	Putative terminase large subunit	NA
UHGV-0154516_12	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0154516_12	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0154516_12	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0154516_13	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0154516_13	UniRef90	UniRef90_A0A316MAA8	Xaa-His dipeptidase	NA
UHGV-0154516_13	eggNOG-mapper	97138.C820_00620	transposase activity	NA
UHGV-0154516_13	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0154516_13	Structural annotation	PF07141	NA	NA
UHGV-0154516_15	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-0154516_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0154516_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0154516_17	UniRef90	UniRef90_A0A350TXF1	DNA helicase	NA
UHGV-0154516_17	eggNOG-mapper	97138.C820_00625	Participates in initiation and elongation during chromosome replication	NA
UHGV-0154516_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0154516_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0154516_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0154516_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0154516_18	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0154516_18	UniRef90	UniRef90_A0A350TXF2	Phage_rep_org_N domain-containing protein	NA
UHGV-0154516_18	eggNOG-mapper	632245.CLP_1613	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0154516_18	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0154516_18	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0154516_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0154516_18	Structural annotation	PF06970, TIGR01714, COG5625	NA	NA
UHGV-0154516_20	PHROG	phrog_17690	NA	unknown function
UHGV-0154516_20	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0154516_22	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0154516_22	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0154516_25	PHROG	phrog_24386	NA	unknown function
UHGV-0154516_25	eggNOG-mapper	411460.RUMTOR_01374	COG NOG28949 non supervised orthologous group	NA
UHGV-0154516_25	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0154516_28	PHROG	phrog_7674	NA	unknown function
UHGV-0154516_28	eggNOG-mapper	1235793.C809_02629	NA	NA
UHGV-0154516_28	Structural annotation	PF06003	NA	NA
UHGV-0154516_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0154516_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0154516_29	UniRef90	UniRef90_A0A401LG78	HTH cro/C1-type domain-containing protein	NA
UHGV-0154516_29	eggNOG-mapper	935948.KE386495_gene1700	Helix-turn-helix XRE-family like proteins	NA
UHGV-0154516_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154516_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0154516_30	PHROG	phrog_9467	NA	unknown function
UHGV-0154516_30	UniRef90	UniRef90_UPI001C3853B3	Gp49 family protein	NA
UHGV-0154516_30	eggNOG-mapper	1226322.HMPREF1545_00781	NA	NA
UHGV-0154516_30	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0154516_30	dbAPIS	APIS043	NA	NA
UHGV-0154516_30	Structural annotation	PF13876	NA	NA
UHGV-0154516_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0154516_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0154516_31	UniRef90	UniRef90_R5ADK0	Single-stranded DNA-binding protein	NA
UHGV-0154516_31	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0154516_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0154516_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0154516_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0154516_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0154516_31	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0154516_32	PHROG	phrog_1029	NA	unknown function
UHGV-0154516_32	eggNOG-mapper	1510440.A0A068EPX8_9CAUD	NA	NA
UHGV-0154516_32	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0154516_33	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0154516_33	UniRef90	UniRef90_A0A350U067	Replication terminator protein	NA
UHGV-0154516_33	eggNOG-mapper	1443125.Z962_p0033	replication terminator protein, phage associated	NA
UHGV-0154516_35	Structural annotation	PF06257, TIGR02728, COG4466	NA	NA
UHGV-0154516_42	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0154516_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0154516_42	UniRef90	UniRef90_R6Q5K1	Transcriptional regulator	NA
UHGV-0154516_42	eggNOG-mapper	1203606.HMPREF1526_01317	Helix-turn-helix XRE-family like proteins	NA
UHGV-0154516_42	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0154516_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0154516_42	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0154516_45	eggNOG-mapper	1163671.JAGI01000002_gene1685	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-0154516_45	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0154516_46	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0154516_46	PHROG	phrog_95	integrase	integration and excision
UHGV-0154516_46	UniRef90	UniRef90_R5AMB7	Recombinase	NA
UHGV-0154516_46	eggNOG-mapper	697281.Mahau_2563	resolvase	NA
UHGV-0154516_46	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0154516_46	Pfam	PF07508	Recombinase	Recombinase
UHGV-0154516_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0154516_46	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA