UHGV-0154556

Genome information

Genome length 33,945 bps

CDS count 65

Completeness 99.13% (high-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154556
vOTU ID	vOTU-010604
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_458189
BioSample	SAMN05971442
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.93
Jumbo phage	No

Genome content
Genome length	33,945 bps
GC content	28.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	88.94%
Average CDS length	468.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154556_1	KOfam	K14059	int; integrase	NA
UHGV-0154556_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0154556_1	UniRef90	UniRef90_A0A3D4T5B0	Tyr recombinase domain-containing protein	NA
UHGV-0154556_1	eggNOG-mapper	632335.Calkr_0077	Belongs to the 'phage' integrase family	NA
UHGV-0154556_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0154556_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0154556_1	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0154556_2	PHROG	phrog_87	metallo-protease	other
UHGV-0154556_2	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-0154556_2	eggNOG-mapper	1449338.JQLU01000004_gene14	IrrE N-terminal-like domain	NA
UHGV-0154556_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0154556_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0154556_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0154556_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0154556_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0154556_3	UniRef90	UniRef90_A0A1Q6LE53	HTH cro/C1-type domain-containing protein	NA
UHGV-0154556_3	eggNOG-mapper	1157490.EL26_15215	sequence-specific DNA binding	NA
UHGV-0154556_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0154556_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154556_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0154556_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0154556_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0154556_4	UniRef90	UniRef90_A0A1Q6LE94	HTH cro/C1-type domain-containing protein	NA
UHGV-0154556_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154556_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0154556_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0154556_8	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154556_8	UniRef90	UniRef90_A0A2V2FQC1	HNHc domain-containing protein	NA
UHGV-0154556_8	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0154556_8	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0154556_9	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0154556_9	UniRef90	UniRef90_A0A353JBC1	DnaB_2 domain-containing protein (Fragment)	NA
UHGV-0154556_9	eggNOG-mapper	1238184.CM001792_gene2546	dnaD_dom DnaD domain protein	NA
UHGV-0154556_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0154556_9	Structural annotation	PF09681, MF_01819, TIGR01714, COG1846	NA	NA
UHGV-0154556_10	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0154556_10	UniRef90	UniRef90_UPI001AD89807	conserved phage C-terminal domain-containing protein	NA
UHGV-0154556_10	eggNOG-mapper	171693.BN988_01627	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0154556_10	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0154556_10	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0154556_10	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0154556_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0154556_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0154556_11	UniRef90	UniRef90_A0A1Q6K3G5	DNA helicase	NA
UHGV-0154556_11	eggNOG-mapper	1444309.JAQG01000074_gene82	Participates in initiation and elongation during chromosome replication	NA
UHGV-0154556_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0154556_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0154556_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0154556_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0154556_16	PHROG	phrog_16527	NA	unknown function
UHGV-0154556_18	PHROG	phrog_17260	NA	unknown function
UHGV-0154556_18	eggNOG-mapper	1232449.BAHV02000018_gene1537	NA	NA
UHGV-0154556_19	PHROG	phrog_625	NA	unknown function
UHGV-0154556_19	UniRef90	UniRef90_A0A3A8X7G1	ASCH domain-containing protein	NA
UHGV-0154556_19	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0154556_19	Structural annotation	PF12961	NA	NA
UHGV-0154556_21	PHROG	phrog_98	NA	unknown function
UHGV-0154556_21	UniRef90	UniRef90_A0A3D1PLG3	YopX domain-containing protein	NA
UHGV-0154556_21	eggNOG-mapper	888059.HMPREF9071_2108	YopX protein	NA
UHGV-0154556_21	Pfam	PF09643	YopX protein	YopX
UHGV-0154556_21	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0154556_21	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0154556_23	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0154556_23	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0154556_23	AcrCatalog	cluster_47493	NA	NA
UHGV-0154556_23	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0154556_27	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0154556_27	Structural annotation	PF01096	NA	NA
UHGV-0154556_33	Structural annotation	TIGR01636	NA	NA
UHGV-0154556_36	PHROG	phrog_10772	NA	unknown function
UHGV-0154556_36	UniRef90	UniRef90_U2K339	TM2 domain protein	NA
UHGV-0154556_36	eggNOG-mapper	411473.RUMCAL_03485	TM2 domain	NA
UHGV-0154556_36	Pfam	PF05154	TM2 domain	TM2
UHGV-0154556_36	COG	COG2314	NA	NA
UHGV-0154556_36	Structural annotation	PF05154, COG2314	NA	NA
UHGV-0154556_38	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154556_38	UniRef90	UniRef90_A0A1Q6M1V2	HNHc domain-containing protein	NA
UHGV-0154556_38	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0154556_41	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0154556_41	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-0154556_41	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0154556_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0154556_42	UniRef90	UniRef90_A0A1Q6M1W9	Terminase	NA
UHGV-0154556_42	eggNOG-mapper	397288.C806_00076	Phage Terminase	NA
UHGV-0154556_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0154556_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0154556_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0154556_42	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0154556_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-0154556_43	UniRef90	UniRef90_A0A1Q6M1W2	Phage portal protein	NA
UHGV-0154556_43	eggNOG-mapper	1399942.U3PFW0_9CAUD	Phage portal protein	NA
UHGV-0154556_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0154556_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0154556_43	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0154556_44	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0154556_44	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0154556_44	UniRef90	UniRef90_A0A1Q6M1U6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0154556_44	eggNOG-mapper	536232.CLM_2055	Belongs to the peptidase S14 family	NA
UHGV-0154556_44	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0154556_44	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0154556_44	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0154556_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-0154556_45	UniRef90	UniRef90_A0A1U7M5C2	Phage capsid family protein	NA
UHGV-0154556_45	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0154556_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0154556_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0154556_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0154556_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0154556_46	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0154556_46	UniRef90	UniRef90_A0A6P1MNU9	Phage gp6-like head-tail connector protein	NA
UHGV-0154556_46	eggNOG-mapper	508419.F8J164_9CAUD	NA	NA
UHGV-0154556_46	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0154556_46	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0154556_47	PHROG	phrog_25	head closure Hc1	connector
UHGV-0154556_47	UniRef90	UniRef90_F8J165	Putative head-tail adaptor	NA
UHGV-0154556_47	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0154556_47	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0154556_47	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0154556_48	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-0154556_48	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0154556_48	Structural annotation	TIGR01725	NA	NA
UHGV-0154556_49	PHROG	phrog_78	tail terminator	connector
UHGV-0154556_49	UniRef90	UniRef90_UPI000C079ECC	NA	NA
UHGV-0154556_49	eggNOG-mapper	1399942.U3PDS3_9CAUD	NA	NA
UHGV-0154556_49	Structural annotation	PF05657	NA	NA
UHGV-0154556_50	PHROG	phrog_88	major tail protein	tail
UHGV-0154556_50	UniRef90	UniRef90_R6GFP9	Putative major tail protein	NA
UHGV-0154556_50	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0154556_50	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0154556_52	PHROG	phrog_2115	tail protein	tail
UHGV-0154556_52	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0154556_52	Structural annotation	PF11836	NA	NA
UHGV-0154556_54	UniRef90	UniRef90_UPI0018CD8BA0	Com family DNA-binding transcriptional regulator	NA
UHGV-0154556_54	eggNOG-mapper	1540257.JQMW01000013_gene732	Mu-like prophage protein Com	NA
UHGV-0154556_55	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0154556_55	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0154556_55	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0154556_55	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0154556_56	eggNOG-mapper	1399942.U3PIW9_9CAUD	Phage tail protein	NA
UHGV-0154556_56	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0154556_56	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0154556_57	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0154556_58	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0154556_58	UniRef90	UniRef90_UPI00135C2B79	phage tail protein	NA
UHGV-0154556_58	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0154556_58	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0154556_58	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0154556_59	PHROG	phrog_1863	NA	unknown function
UHGV-0154556_59	eggNOG-mapper	552398.HMPREF0866_01158	NA	NA
UHGV-0154556_60	Structural annotation	PF16938	NA	NA
UHGV-0154556_61	KOfam	K24076	PGRP-LB; peptidoglycan-recognition protein LB [EC:3.5.1.28]	NA
UHGV-0154556_61	PHROG	phrog_35436	amidase	lysis
UHGV-0154556_61	UniRef90	UniRef90_R6XV44	SH3b domain-containing protein	NA
UHGV-0154556_61	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0154556_61	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0154556_61	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0154556_61	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0154556_61	Structural annotation	PF01510, PF18342, PF08239, MF_04111, NF040670, NF008758, COG5632	NA	NA
UHGV-0154556_63	UniRef90	UniRef90_R7P7N4	Endoribonuclease EndoA	NA
UHGV-0154556_63	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0154556_63	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0154556_64	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0154556_64	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0154556_64	UniRef90	UniRef90_R6YGA8	Post-exponential-phase responses transcriptional regulator	NA
UHGV-0154556_64	eggNOG-mapper	1126885.I3VYY8_9CAUD	sequence-specific DNA binding	NA
UHGV-0154556_64	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0154556_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154556_64	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0154556_64	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA