UHGV-0154599

Genome information

Genome length 38,212 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154599
vOTU ID	vOTU-004720
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_499983
BioSample	SAMN06110114
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.09
Jumbo phage	No

Genome content
Genome length	38,212 bps
GC content	45.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.65%
Average CDS length	613.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154599_1	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0154599_1	UniRef90	UniRef90_A0A0H5Q879	Rep_3 domain-containing protein	NA
UHGV-0154599_1	eggNOG-mapper	936596.HMPREF1495_0080	Initiator Replication protein	NA
UHGV-0154599_1	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0154599_1	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0154599_1	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0154599_1	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0154599_2	UniRef90	UniRef90_A0A3C0II80	DZANK-type domain-containing protein	NA
UHGV-0154599_2	eggNOG-mapper	575594.ACOH01000003_gene833	zinc-ribbon domain	NA
UHGV-0154599_2	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0154599_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0154599_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0154599_3	UniRef90	UniRef90_B0MKY5	DNA-binding helix-turn-helix protein	NA
UHGV-0154599_3	eggNOG-mapper	1392502.JNIO01000008_gene1592	Transcriptional	NA
UHGV-0154599_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154599_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0154599_3	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0154599_6	UniRef90	UniRef90_A0A7W8MVA4	Plasmid maintenance system antidote protein VapI	NA
UHGV-0154599_6	eggNOG-mapper	293826.Amet_0839	NA	NA
UHGV-0154599_7	Structural annotation	PF17888	NA	NA
UHGV-0154599_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0154599_8	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0154599_8	UniRef90	UniRef90_J4TS99	Phage antirepressor protein KilAC domain protein	NA
UHGV-0154599_8	eggNOG-mapper	936573.HMPREF1147_1710	Phage antirepressor protein	NA
UHGV-0154599_8	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0154599_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0154599_8	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0154599_8	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0154599_15	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0154599_15	UniRef90	UniRef90_UPI001EE8E2AA	recombinase RecT	NA
UHGV-0154599_15	eggNOG-mapper	861454.HMPREF9099_00346	NA	NA
UHGV-0154599_15	Pfam	PF03837	RecT family	RecT
UHGV-0154599_15	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-0154599_16	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154599_16	UniRef90	UniRef90_A0A352TI30	NA	NA
UHGV-0154599_16	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0154599_16	Pfam	PF12684	NA	DUF3799
UHGV-0154599_16	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0154599_16	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0154599_17	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0154599_17	UniRef90	UniRef90_A0A352DNR2	ERCC4 domain-containing protein	NA
UHGV-0154599_17	eggNOG-mapper	1499683.CCFF01000005_gene55	ERCC4 domain	NA
UHGV-0154599_17	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0154599_17	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0154599_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0154599_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0154599_18	UniRef90	UniRef90_R5VJF6	Single-stranded DNA-binding protein	NA
UHGV-0154599_18	eggNOG-mapper	1514668.JOOA01000002_gene3349	Single-stranded DNA-binding protein	NA
UHGV-0154599_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0154599_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0154599_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0154599_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0154599_18	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0154599_19	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0154599_19	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0154599_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0154599_19	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0154599_20	Structural annotation	PF13613	NA	NA
UHGV-0154599_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0154599_22	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0154599_23	PHROG	phrog_13561	NA	unknown function
UHGV-0154599_23	Structural annotation	PF21441, COG5045	NA	NA
UHGV-0154599_26	UniRef90	UniRef90_UPI001D064C11	Lar family restriction alleviation protein	NA
UHGV-0154599_26	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0154599_26	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0154599_26	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0154599_27	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0154599_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0154599_27	UniRef90	UniRef90_A0A3D4KZM8	PAPS_reduct domain-containing protein	NA
UHGV-0154599_27	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0154599_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0154599_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0154599_27	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0154599_30	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0154599_30	UniRef90	UniRef90_A0A8G1WT09	MazG domain-containing protein	NA
UHGV-0154599_30	Structural annotation	PF10400, MF_01019, NF010671, COG0140	NA	NA
UHGV-0154599_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0154599_32	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0154599_33	PHROG	phrog_2412	NA	unknown function
UHGV-0154599_33	UniRef90	UniRef90_A0A8B6LDF0	NA	NA
UHGV-0154599_33	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0154599_33	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0154599_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0154599_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0154599_34	UniRef90	UniRef90_A0A315Y4A8	PBSX family phage terminase large subunit	NA
UHGV-0154599_34	eggNOG-mapper	641112.ACOK01000073_gene2888	Phage terminase, large subunit, PBSX family	NA
UHGV-0154599_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0154599_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0154599_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0154599_34	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0154599_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0154599_35	UniRef90	UniRef90_UPI001C1263AE	phage portal protein	NA
UHGV-0154599_35	eggNOG-mapper	641112.ACOK01000073_gene2889	NA	NA
UHGV-0154599_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0154599_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0154599_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0154599_36	UniRef90	UniRef90_U2K8C2	Phage minor capsid protein 2	NA
UHGV-0154599_36	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0154599_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0154599_36	COG	COG2369	NA	NA
UHGV-0154599_36	Structural annotation	PF06152	NA	NA
UHGV-0154599_38	PHROG	phrog_1048	NA	unknown function
UHGV-0154599_38	UniRef90	UniRef90_A0A3D5KWH4	NA	NA
UHGV-0154599_38	eggNOG-mapper	411473.RUMCAL_01927	NA	NA
UHGV-0154599_38	Pfam	PF11195	NA	DUF2829
UHGV-0154599_38	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0154599_38	Structural annotation	PF11195	NA	NA
UHGV-0154599_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0154599_39	UniRef90	UniRef90_A0A174LGM6	Phage minor structural protein GP20	NA
UHGV-0154599_39	eggNOG-mapper	641112.ACOK01000073_gene2893	Phage minor structural protein GP20	NA
UHGV-0154599_39	Structural annotation	PF06810	NA	NA
UHGV-0154599_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0154599_40	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0154599_40	eggNOG-mapper	641112.ACOK01000073_gene2894	NA	NA
UHGV-0154599_40	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0154599_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0154599_41	eggNOG-mapper	641112.ACOK01000073_gene2896	NA	NA
UHGV-0154599_42	PHROG	phrog_3366	NA	unknown function
UHGV-0154599_42	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-0154599_42	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0154599_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0154599_43	UniRef90	UniRef90_A0A352TI11	Capsid protein	NA
UHGV-0154599_43	eggNOG-mapper	1160721.RBI_II00534	Minor capsid protein	NA
UHGV-0154599_43	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0154599_43	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0154599_44	PHROG	phrog_3266	tail completion	connector
UHGV-0154599_44	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-0154599_44	eggNOG-mapper	411473.RUMCAL_01934	NA	NA
UHGV-0154599_44	Structural annotation	PF12691	NA	NA
UHGV-0154599_45	PHROG	phrog_3099	NA	unknown function
UHGV-0154599_45	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-0154599_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0154599_46	PHROG	phrog_4450	NA	unknown function
UHGV-0154599_46	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0154599_46	Pfam	PF20378	NA	DUF6673
UHGV-0154599_46	Structural annotation	PF20378	NA	NA
UHGV-0154599_47	PHROG	phrog_706	NA	unknown function
UHGV-0154599_47	UniRef90	UniRef90_A0A315Y4B3	Bacteriophage Gp15 protein	NA
UHGV-0154599_47	eggNOG-mapper	411461.DORFOR_00737	COG NOG24969 non supervised orthologous group	NA
UHGV-0154599_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0154599_47	Structural annotation	PF06854	NA	NA
UHGV-0154599_48	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0154599_48	UniRef90	UniRef90_A0A3D5KWG5	PhageMin_Tail domain-containing protein	NA
UHGV-0154599_48	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-0154599_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0154599_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0154599_48	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0154599_48	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0154599_49	Structural annotation	PF05939, TIGR01633, COG4718	NA	NA
UHGV-0154599_50	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-0154599_51	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0154599_51	PHROG	phrog_25888	NA	unknown function
UHGV-0154599_51	eggNOG-mapper	411473.RUMCAL_01941	cell adhesion	NA
UHGV-0154599_51	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0154599_51	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0154599_55	PHROG	phrog_199	holin	lysis
UHGV-0154599_55	UniRef90	UniRef90_A0A352TKQ2	Holin	NA
UHGV-0154599_55	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0154599_55	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0154599_55	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0154599_55	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0154599_55	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0154599_57	PHROG	phrog_25567	NA	unknown function
UHGV-0154599_57	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0154599_58	KOfam	K07273	acm; lysozyme	NA
UHGV-0154599_58	PHROG	phrog_291	endolysin	lysis
UHGV-0154599_58	UniRef90	UniRef90_A0A3D5KVU8	Peptidase_M15_3 domain-containing protein	NA
UHGV-0154599_58	eggNOG-mapper	1384066.JAGT01000001_gene920	hydrolase, family 25	NA
UHGV-0154599_58	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0154599_58	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0154599_58	COG	COG3108	NA	NA
UHGV-0154599_58	Structural annotation	PF01183, PF08291, NF007557, COG3757, COG3108	NA	NA