UHGV-0154635

Genome information

Genome length 12,311 bps

CDS count 14

Completeness 56.53% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154635
vOTU ID	vOTU-027652
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_493352
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	56.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.79
Jumbo phage	No

Genome content
Genome length	12,311 bps
GC content	41.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	14
CDS density	96.28%
Average CDS length	850.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154635_1	Structural annotation	PF17427	NA	NA
UHGV-0154635_4	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0154635_4	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0154635_4	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0154635_4	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0154635_4	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0154635_4	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0154635_6	PHROG	phrog_2150	terminase	head and packaging
UHGV-0154635_6	UniRef90	UniRef90_A0A843HWD4	Phage DNA encapsidation protein	NA
UHGV-0154635_6	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0154635_6	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0154635_6	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0154635_8	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0154635_8	PHROG	phrog_3513	endolysin	lysis
UHGV-0154635_8	UniRef90	UniRef90_A0A1M7YC07	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0154635_8	eggNOG-mapper	1235794.C811_01508	amidase activity	NA
UHGV-0154635_8	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0154635_8	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0154635_8	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0154635_8	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-0154635_9	PHROG	phrog_32779	NA	unknown function
UHGV-0154635_11	PHROG	phrog_2038	upper collar connector	connector
UHGV-0154635_11	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0154635_11	Structural annotation	PF05352, TIGR01537, COG4695	NA	NA
UHGV-0154635_12	PHROG	phrog_2248	tail protein	tail
UHGV-0154635_12	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0154635_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0154635_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA