UHGV-0154654

Genome information

Genome length 40,394 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154654
vOTU ID	vOTU-046194
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_456031
BioSample	SAMN05971596
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.19
Jumbo phage	No

Genome content
Genome length	40,394 bps
GC content	36.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	95.38%
Average CDS length	704.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154654_1	PHROG	phrog_376	tail protein	tail
UHGV-0154654_1	UniRef90	UniRef90_A0A364NVG8	E1_FCCH domain-containing protein	NA
UHGV-0154654_1	eggNOG-mapper	1401067.HMPREF0872_06775	NA	NA
UHGV-0154654_1	Structural annotation	PF19056, PF20328, TIGR02658, COG2706	NA	NA
UHGV-0154654_2	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0154654_2	UniRef90	UniRef90_UPI001D08FF44	NA	NA
UHGV-0154654_2	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-0154654_2	Structural annotation	PF11039, MF_02210, NF000165, COG1247	NA	NA
UHGV-0154654_3	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0154654_3	eggNOG-mapper	1401067.HMPREF0872_06765	NA	NA
UHGV-0154654_3	Structural annotation	PF05384, TIGR01010, COG3524	NA	NA
UHGV-0154654_4	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0154654_4	UniRef90	UniRef90_A0A096AJQ8	NlpC/P60 domain-containing protein	NA
UHGV-0154654_4	eggNOG-mapper	1401067.HMPREF0872_06760	NA	NA
UHGV-0154654_4	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0154654_4	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0154654_5	PHROG	phrog_9880	NA	unknown function
UHGV-0154654_5	UniRef90	UniRef90_D1YMD8	MuF_C domain-containing protein	NA
UHGV-0154654_5	eggNOG-mapper	568816.Acin_1824	NA	NA
UHGV-0154654_5	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0154654_6	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0154654_6	UniRef90	UniRef90_A0A2S7ZGN5	Pectate_lyase_3 domain-containing protein	NA
UHGV-0154654_6	eggNOG-mapper	1150626.PHAMO_180136	NA	NA
UHGV-0154654_6	Structural annotation	PF05096, PF03906, MF_03008, TIGR03866, COG3204	NA	NA
UHGV-0154654_8	PHROG	phrog_23091	NA	unknown function
UHGV-0154654_8	Structural annotation	PF05105, NF035928	NA	NA
UHGV-0154654_10	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0154654_10	PHROG	phrog_894	endolysin	lysis
UHGV-0154654_10	UniRef90	UniRef90_A0A496P8E9	NA	NA
UHGV-0154654_10	eggNOG-mapper	613026.HRAG_01219	NA	NA
UHGV-0154654_10	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0154654_10	COG	COG3108	NA	NA
UHGV-0154654_10	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0154654_11	PHROG	phrog_10797	NA	unknown function
UHGV-0154654_11	UniRef90	UniRef90_A0A1B1I041	Glycoprotease	NA
UHGV-0154654_11	eggNOG-mapper	883156.HMPREF9282_01266	NA	NA
UHGV-0154654_11	Structural annotation	PF06531	NA	NA
UHGV-0154654_13	KOfam	K14059	int; integrase	NA
UHGV-0154654_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0154654_13	UniRef90	UniRef90_UPI001D0692F2	site-specific integrase	NA
UHGV-0154654_13	eggNOG-mapper	1232428.CAVO010000003_gene1025	Belongs to the 'phage' integrase family	NA
UHGV-0154654_13	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0154654_13	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0154654_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0154654_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0154654_13	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0154654_14	PHROG	phrog_20936	NA	unknown function
UHGV-0154654_14	UniRef90	UniRef90_UPI001D086FA7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0154654_14	eggNOG-mapper	706434.HMPREF9429_00182	NA	NA
UHGV-0154654_14	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0154654_14	Structural annotation	PF06114	NA	NA
UHGV-0154654_16	eggNOG-mapper	883156.HMPREF9282_00651	NA	NA
UHGV-0154654_16	Structural annotation	PF16747	NA	NA
UHGV-0154654_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0154654_17	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0154654_17	UniRef90	UniRef90_UPI0007511C0F	helix-turn-helix domain-containing protein	NA
UHGV-0154654_17	eggNOG-mapper	861450.HMPREF0080_02022	Helix-turn-helix XRE-family like proteins	NA
UHGV-0154654_17	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0154654_17	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0154654_17	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0154654_18	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0154654_18	UniRef90	UniRef90_D1YMA5	DNA-binding helix-turn-helix protein	NA
UHGV-0154654_18	eggNOG-mapper	1401067.HMPREF0872_06900	DNA-binding helix-turn-helix protein	NA
UHGV-0154654_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154654_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0154654_18	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0154654_20	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0154654_20	UniRef90	UniRef90_UPI001D08B64F	helix-turn-helix domain-containing protein	NA
UHGV-0154654_20	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0154654_20	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-0154654_21	Structural annotation	NF008912	NA	NA
UHGV-0154654_22	PHROG	phrog_674	NA	unknown function
UHGV-0154654_22	UniRef90	UniRef90_UPI001D090BA8	NA	NA
UHGV-0154654_22	eggNOG-mapper	1415775.U729_15	NA	NA
UHGV-0154654_22	Pfam	PF07083	NA	DUF1351
UHGV-0154654_22	Structural annotation	PF07083	NA	NA
UHGV-0154654_23	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154654_23	UniRef90	UniRef90_UPI001D07B780	RAD52 family DNA repair protein	NA
UHGV-0154654_23	eggNOG-mapper	1485543.JMME01000021_gene803	NA	NA
UHGV-0154654_23	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0154654_23	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0154654_24	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0154654_24	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0154654_24	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0154654_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0154654_25	PHROG	phrog_7785	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154654_25	UniRef90	UniRef90_UPI001D0937EE	HNH endonuclease	NA
UHGV-0154654_25	eggNOG-mapper	429009.Adeg_0841	PFAM HNH endonuclease	NA
UHGV-0154654_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0154654_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0154654_25	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0154654_27	PHROG	phrog_1163	NA	unknown function
UHGV-0154654_27	UniRef90	UniRef90_UPI001D075DB7	conserved phage C-terminal domain-containing protein	NA
UHGV-0154654_27	eggNOG-mapper	372457.A7DYC7_9CAUD	calcium ion binding	NA
UHGV-0154654_27	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0154654_27	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0154654_27	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0154654_28	PHROG	phrog_9804	NA	unknown function
UHGV-0154654_28	Structural annotation	PF11417	NA	NA
UHGV-0154654_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0154654_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0154654_30	UniRef90	UniRef90_UPI001D069DF3	single-stranded DNA-binding protein	NA
UHGV-0154654_30	eggNOG-mapper	936589.HMPREF1521_1228	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0154654_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0154654_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0154654_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0154654_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0154654_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0154654_31	PHROG	phrog_774	NA	unknown function
UHGV-0154654_31	eggNOG-mapper	1042156.CXIVA_01820	NA	NA
UHGV-0154654_32	PHROG	phrog_1672	NA	unknown function
UHGV-0154654_32	UniRef90	UniRef90_F5L204	Conserved domain protein	NA
UHGV-0154654_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0154654_34	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0154654_34	UniRef90	UniRef90_UPI00196047F8	site-specific DNA-methyltransferase	NA
UHGV-0154654_34	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0154654_34	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0154654_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0154654_34	COG	COG0863	DNA modification methylase	NA
UHGV-0154654_34	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0154654_35	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0154654_35	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0154654_35	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0154654_35	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0154654_36	Structural annotation	PF13384, NF040595	NA	NA
UHGV-0154654_37	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0154654_37	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0154654_37	UniRef90	UniRef90_UPI000AF5B6BD	dUTP diphosphatase	NA
UHGV-0154654_37	eggNOG-mapper	36080.S2JYN8	dUTPase	NA
UHGV-0154654_37	Pfam	PF00692	dUTPase	dUTPase
UHGV-0154654_37	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0154654_37	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0154654_37	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0154654_40	PHROG	phrog_21026	NA	unknown function
UHGV-0154654_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0154654_41	UniRef90	UniRef90_UPI0013DFE289	NA	NA
UHGV-0154654_41	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-0154654_41	Structural annotation	PF07374	NA	NA
UHGV-0154654_45	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0154654_45	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0154654_45	UniRef90	UniRef90_A0A2S7ZGQ0	Terminase small subunit	NA
UHGV-0154654_45	eggNOG-mapper	318464.IO99_00540	Terminase small subunit	NA
UHGV-0154654_45	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0154654_45	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0154654_45	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0154654_46	PHROG	phrog_5902	NA	unknown function
UHGV-0154654_46	UniRef90	UniRef90_UPI0018A6EFE4	terminase	NA
UHGV-0154654_46	eggNOG-mapper	1200557.JHWV01000001_gene277	Terminase RNaseH-like domain	NA
UHGV-0154654_46	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0154654_46	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0154654_48	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0154654_48	UniRef90	UniRef90_UPI001D07F371	portal protein	NA
UHGV-0154654_48	eggNOG-mapper	1401067.HMPREF0872_06810	Bacteriophage head to tail connecting protein	NA
UHGV-0154654_48	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0154654_48	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0154654_49	PHROG	phrog_528	NA	unknown function
UHGV-0154654_49	eggNOG-mapper	568816.Acin_1833	NA	NA
UHGV-0154654_50	PHROG	phrog_458	protease	other
UHGV-0154654_50	eggNOG-mapper	1401067.HMPREF0872_06800	NA	NA
UHGV-0154654_51	PHROG	phrog_212	major head protein	head and packaging
UHGV-0154654_51	UniRef90	UniRef90_A0A239Z8I8	Phage capsid family	NA
UHGV-0154654_51	eggNOG-mapper	1401067.HMPREF0872_06795	NA	NA
UHGV-0154654_51	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0154654_51	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0154654_52	PHROG	phrog_427	NA	unknown function
UHGV-0154654_52	Structural annotation	PF21190	NA	NA
UHGV-0154654_54	PHROG	phrog_394	tail protein	tail
UHGV-0154654_54	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-0154654_54	Structural annotation	PF17212	NA	NA
UHGV-0154654_55	PHROG	phrog_376	tail protein	tail
UHGV-0154654_55	eggNOG-mapper	1401067.HMPREF0872_06775	NA	NA