UHGV-0154737

Genome information

Genome length 39,650 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154737
vOTU ID	vOTU-046196
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_471143
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.81
Jumbo phage	No

Genome content
Genome length	39,650 bps
GC content	37.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	87.73%
Average CDS length	522.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154737_1	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0154737_1	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0154737_1	eggNOG-mapper	1219080.VEZ01S_05_00370	Resolvase, N terminal domain	NA
UHGV-0154737_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0154737_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0154737_6	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0154737_6	UniRef90	UniRef90_A0A355YQL4	DNA cytosine methyltransferase	NA
UHGV-0154737_6	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0154737_6	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0154737_6	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0154737_7	PHROG	phrog_3136	NA	unknown function
UHGV-0154737_7	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0154737_7	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0154737_7	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0154737_7	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0154737_8	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0154737_8	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0154737_8	UniRef90	UniRef90_A0A3D4KZM8	PAPS_reduct domain-containing protein	NA
UHGV-0154737_8	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0154737_8	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0154737_8	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0154737_8	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0154737_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0154737_10	PHROG	phrog_17284	NA	unknown function
UHGV-0154737_10	UniRef90	UniRef90_A0A350S1S8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0154737_10	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0154737_10	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0154737_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0154737_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0154737_11	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0154737_11	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0154737_11	UniRef90	UniRef90_A0A412KF70	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0154737_11	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0154737_11	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0154737_11	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0154737_11	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0154737_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0154737_14	PHROG	phrog_8684	NA	unknown function
UHGV-0154737_14	UniRef90	UniRef90_A0A412ULY6	YopX domain-containing protein	NA
UHGV-0154737_14	eggNOG-mapper	40522.A8ASP1_BPA50	YopX protein	NA
UHGV-0154737_14	Pfam	PF09643	YopX protein	YopX
UHGV-0154737_16	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0154737_16	UniRef90	UniRef90_UPI0008D987E5	helix-turn-helix domain-containing protein	NA
UHGV-0154737_16	eggNOG-mapper	1122172.KB890259_gene1441	NA	NA
UHGV-0154737_16	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0154737_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0154737_16	Structural annotation	NF040939, COG3355	NA	NA
UHGV-0154737_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0154737_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0154737_17	UniRef90	UniRef90_A0A1V5ZUU4	Single-stranded DNA-binding protein	NA
UHGV-0154737_17	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0154737_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0154737_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0154737_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0154737_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0154737_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0154737_18	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0154737_18	UniRef90	UniRef90_A0A414SKQ9	ERCC4 domain-containing protein	NA
UHGV-0154737_18	eggNOG-mapper	1163671.JAGI01000002_gene1297	ERCC4 domain	NA
UHGV-0154737_18	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0154737_18	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0154737_20	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0154737_20	UniRef90	UniRef90_UPI001D07CFE1	recombinase RecT	NA
UHGV-0154737_20	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0154737_20	Structural annotation	NF007351	NA	NA
UHGV-0154737_21	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-0154737_22	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0154737_22	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0154737_23	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154737_23	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0154737_27	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0154737_27	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0154737_28	Pfam	PF02915	Rubrerythrin	Rubrerythrin
UHGV-0154737_31	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0154737_32	PHROG	phrog_16490	NA	unknown function
UHGV-0154737_32	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0154737_34	PHROG	phrog_21718	NA	unknown function
UHGV-0154737_34	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0154737_36	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0154737_36	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0154737_37	AcrCatalog	cluster_17974	NA	NA
UHGV-0154737_39	PHROG	phrog_443	holin	lysis
UHGV-0154737_39	UniRef90	UniRef90_A0A1M6RHE6	Holin, r1t family	NA
UHGV-0154737_39	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0154737_39	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0154737_40	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0154737_40	PHROG	phrog_3088	amidase	lysis
UHGV-0154737_40	UniRef90	UniRef90_A0A8F2F1D1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0154737_40	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0154737_40	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0154737_40	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0154737_40	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0154737_44	PHROG	phrog_24267	NA	unknown function
UHGV-0154737_44	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-0154737_44	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0154737_44	COG	COG4675	Phage tail collar domain	NA
UHGV-0154737_44	Structural annotation	COG4675	NA	NA
UHGV-0154737_45	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0154737_46	PHROG	phrog_1194	NA	unknown function
UHGV-0154737_46	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0154737_46	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0154737_46	Pfam	PF20458	NA	DUF6711
UHGV-0154737_46	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0154737_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0154737_47	eggNOG-mapper	1121333.JMLH01000047_gene1009	NA	NA
UHGV-0154737_50	eggNOG-mapper	1211844.CBLM010000023_gene989	NA	NA
UHGV-0154737_50	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0154737_51	Structural annotation	PF06141	NA	NA
UHGV-0154737_53	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0154737_55	PHROG	phrog_212	major head protein	head and packaging
UHGV-0154737_55	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0154737_55	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0154737_55	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0154737_56	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154737_56	UniRef90	UniRef90_A0A3R6RDR5	GIY-YIG domain-containing protein	NA
UHGV-0154737_56	eggNOG-mapper	1139219.I569_01385	NUMOD3 motif (2 copies)	NA
UHGV-0154737_56	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0154737_56	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0154737_56	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0154737_56	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0154737_56	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-0154737_58	PHROG	phrog_64	portal protein	head and packaging
UHGV-0154737_58	UniRef90	UniRef90_A0A7X7EMS9	Phage portal protein	NA
UHGV-0154737_58	eggNOG-mapper	428127.EUBDOL_01552	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0154737_58	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0154737_58	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0154737_59	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0154737_59	Pfam	PF14890	Intein splicing domain	Intein_splicing
UHGV-0154737_59	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0154737_59	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0154737_60	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0154737_60	UniRef90	UniRef90_A0A7X8EV86	NA	NA
UHGV-0154737_60	eggNOG-mapper	943335.F4N9T4_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0154737_60	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0154737_60	Structural annotation	PF18909	NA	NA
UHGV-0154737_63	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0154737_63	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0154737_63	UniRef90	UniRef90_A0A1E5NH19	FtsK domain-containing protein	NA
UHGV-0154737_63	eggNOG-mapper	714313.LSA_10210	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0154737_63	PADLOC	SspH_00004	SspH	SSP
UHGV-0154737_63	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0154737_63	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0154737_63	Structural annotation	PF01580, PF17854, MF_01076, NF041214, COG0433	NA	NA
UHGV-0154737_65	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0154737_66	PHROG	phrog_4973	NA	unknown function
UHGV-0154737_66	UniRef90	UniRef90_A0A3R6RL03	DNA-binding protein	NA
UHGV-0154737_66	eggNOG-mapper	40215.BBOS01000010_gene3125	Helix-turn-helix domain	NA
UHGV-0154737_66	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0154737_66	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0154737_67	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0154737_67	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0154737_67	eggNOG-mapper	1123311.KB904475_gene1420	recombinase activity	NA
UHGV-0154737_67	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0154737_67	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA