UHGV-0154766

Genome information

Genome length 54,462 bps

CDS count 68

Completeness 94.20% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154766
vOTU ID	vOTU-061000
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_460384
BioSample	SAMN05971665
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.20% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.3
Jumbo phage	No

Genome content
Genome length	54,462 bps
GC content	38.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	94.21%
Average CDS length	760.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154766_1	KOfam	K16364	GLDN; gliomedin	NA
UHGV-0154766_1	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0154766_1	UniRef90	UniRef90_A0A8B1YVU1	SGNH/GDSL hydrolase family protein	NA
UHGV-0154766_1	eggNOG-mapper	1349822.NSB1T_12060	NA	NA
UHGV-0154766_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0154766_3	PHROG	phrog_998	endolysin	lysis
UHGV-0154766_3	UniRef90	UniRef90_A0A4D6AB26	Lysin	NA
UHGV-0154766_3	eggNOG-mapper	873448.STRPO_0302	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0154766_3	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0154766_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0154766_3	Structural annotation	PF05382, PF18341, NF033742, COG0791, COG4991	NA	NA
UHGV-0154766_7	Structural annotation	PF17376	NA	NA
UHGV-0154766_8	PHROG	phrog_1494	NA	unknown function
UHGV-0154766_24	UniRef90	UniRef90_UPI0012BC163C	Ig-like domain-containing protein	NA
UHGV-0154766_24	eggNOG-mapper	278197.PEPE_0128	Collagen binding domain	NA
UHGV-0154766_24	Pfam	PF17961	Bacterial Ig domain	Big_8
UHGV-0154766_24	Pfam	PF05737	Collagen binding domain	Collagen_bind
UHGV-0154766_24	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-0154766_24	Structural annotation	PF05737, PF17961, NF000535	NA	NA
UHGV-0154766_28	PHROG	phrog_4079	NA	unknown function
UHGV-0154766_28	eggNOG-mapper	665956.HMPREF1032_00637	NA	NA
UHGV-0154766_33	PHROG	phrog_2152	NA	unknown function
UHGV-0154766_33	Pfam	PF19880	NA	DUF6353
UHGV-0154766_33	Structural annotation	PF19880, NF010306	NA	NA
UHGV-0154766_41	PHROG	phrog_1485	NA	unknown function
UHGV-0154766_41	eggNOG-mapper	1225805.J7KDH9_9CAUD	NA	NA
UHGV-0154766_41	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0154766_43	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0154766_43	UniRef90	UniRef90_A0A6G5Y767	SF3 helicase domain-containing protein	NA
UHGV-0154766_43	eggNOG-mapper	475178.B2BTL9_9CAUD	nucleic acid binding	NA
UHGV-0154766_43	Pfam	PF19263	NA	DUF5906
UHGV-0154766_43	Structural annotation	PF00136, PF09250, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0154766_44	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0154766_44	UniRef90	UniRef90_D4P7U6	Gp078	NA
UHGV-0154766_44	eggNOG-mapper	411460.RUMTOR_01384	NA	NA
UHGV-0154766_44	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0154766_45	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0154766_45	UniRef90	UniRef90_A0A7X4ZP73	Helicase C-terminal domain-containing protein	NA
UHGV-0154766_45	eggNOG-mapper	665950.HMPREF1025_01961	Helicase conserved C-terminal domain	NA
UHGV-0154766_45	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0154766_45	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0154766_46	UniRef90	UniRef90_A0A5J6D7X3	Hydrolase	NA
UHGV-0154766_46	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-0154766_46	Structural annotation	PF01870, COG1591	NA	NA
UHGV-0154766_47	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154766_47	UniRef90	UniRef90_A0A6M3SVC0	Cas4 family exonuclease	NA
UHGV-0154766_47	eggNOG-mapper	478749.BRYFOR_08535	NA	NA
UHGV-0154766_47	Pfam	PF10926	NA	DUF2800
UHGV-0154766_47	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0154766_48	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0154766_48	UniRef90	UniRef90_A0A1C5MZZ8	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0154766_48	eggNOG-mapper	742740.HMPREF9474_02278	NA	NA
UHGV-0154766_48	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0154766_48	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0154766_48	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0154766_48	Structural annotation	PF05183	NA	NA
UHGV-0154766_49	PHROG	phrog_4303	NA	unknown function
UHGV-0154766_49	eggNOG-mapper	475178.B2BTP0_9CAUD	NA	NA
UHGV-0154766_51	PHROG	phrog_6918	holin	lysis
UHGV-0154766_51	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0154766_51	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0154766_52	PHROG	phrog_4259	NA	unknown function
UHGV-0154766_52	eggNOG-mapper	742733.HMPREF9469_05037	NA	NA
UHGV-0154766_53	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154766_53	UniRef90	UniRef90_X4YEE5	Homing endonuclease	NA
UHGV-0154766_53	eggNOG-mapper	665956.HMPREF1032_00668	NA	NA
UHGV-0154766_54	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0154766_54	eggNOG-mapper	478749.BRYFOR_08528	NA	NA
UHGV-0154766_55	PHROG	phrog_19428	NA	unknown function
UHGV-0154766_56	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0154766_56	UniRef90	UniRef90_A0A5C7M263	Terminase	NA
UHGV-0154766_56	eggNOG-mapper	691965.D4P7C5_9CAUD	Phage Terminase	NA
UHGV-0154766_56	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0154766_56	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0154766_56	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0154766_57	PHROG	phrog_12	portal protein	head and packaging
UHGV-0154766_57	UniRef90	UniRef90_UPI001C27D37B	phage portal protein	NA
UHGV-0154766_57	eggNOG-mapper	665956.HMPREF1032_00674	Phage portal protein	NA
UHGV-0154766_57	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0154766_57	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0154766_58	KOfam	K06904	NA	NA
UHGV-0154766_58	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0154766_58	UniRef90	UniRef90_A0A6G5Y7H0	BIG2 domain-containing protein	NA
UHGV-0154766_58	eggNOG-mapper	1476888.X4YUP1_9CAUD	peptidase activity	NA
UHGV-0154766_58	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0154766_58	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0154766_59	PHROG	phrog_4270	NA	unknown function
UHGV-0154766_59	eggNOG-mapper	742740.HMPREF9474_02268	NA	NA
UHGV-0154766_60	UniRef90	UniRef90_A0A6M3SVH0	Tail terminator	NA
UHGV-0154766_60	eggNOG-mapper	478749.BRYFOR_08519	NA	NA
UHGV-0154766_60	Structural annotation	PF20765	NA	NA
UHGV-0154766_61	PHROG	phrog_2645	major tail protein	tail
UHGV-0154766_61	UniRef90	UniRef90_A0A7X7CG90	Ig-like domain-containing protein	NA
UHGV-0154766_61	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-0154766_61	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0154766_62	PHROG	phrog_4282	NA	unknown function
UHGV-0154766_62	eggNOG-mapper	742733.HMPREF9469_05024	NA	NA
UHGV-0154766_63	PHROG	phrog_4338	NA	unknown function
UHGV-0154766_63	eggNOG-mapper	1537917.JU82_06570	NA	NA
UHGV-0154766_64	PHROG	phrog_7502	NA	unknown function
UHGV-0154766_65	UniRef90	UniRef90_A0A374AC21	HK97 gp10 family phage protein	NA
UHGV-0154766_65	eggNOG-mapper	478749.BRYFOR_08514	NA	NA
UHGV-0154766_65	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0154766_66	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0154766_66	eggNOG-mapper	742733.HMPREF9469_05020	phage tail tape measure protein	NA
UHGV-0154766_66	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0154766_66	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0154766_66	COG	COG5412	Phage-related protein	NA
UHGV-0154766_67	UniRef90	UniRef90_A0A1L5FA70	Phage tail protein	NA
UHGV-0154766_67	eggNOG-mapper	1408422.JHYF01000021_gene970	tail component	NA
UHGV-0154766_67	COG	COG4722	Phage-related protein YomH	NA
UHGV-0154766_67	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0154766_68	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0154766_68	UniRef90	UniRef90_A0A181ZKV3	Prophage tail endopeptidase	NA
UHGV-0154766_68	eggNOG-mapper	1329250.WOSG25_220020	Prophage endopeptidase tail	NA
UHGV-0154766_68	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0154766_68	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0154766_68	COG	COG4926	Phage-related protein	NA
UHGV-0154766_68	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA