UHGV-0154802

Genome information

Genome length 30,696 bps

CDS count 57

Completeness 52.50% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154802
vOTU ID	vOTU-027662
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_449404
BioSample	SAMN05971712
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.93
Jumbo phage	No

Genome content
Genome length	30,696 bps
GC content	54.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.01%
Average CDS length	494.58 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154802_1	eggNOG-mapper	1336234.JAGN01000037_gene600	Phosphoglucose isomerase	NA
UHGV-0154802_1	COG	COG0166	Glucose-6-phosphate isomerase	NA
UHGV-0154802_2	eggNOG-mapper	1297617.JPJD01000062_gene2826	NA	NA
UHGV-0154802_2	COG	COG0593	Chromosomal replication initiation ATPase DnaA	NA
UHGV-0154802_3	KOfam	K02855	rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS	NA
UHGV-0154802_3	PHROG	phrog_11275	NA	unknown function
UHGV-0154802_3	UniRef90	UniRef90_R5IRI8	Transcriptional regulator AraC family	NA
UHGV-0154802_3	eggNOG-mapper	1378168.N510_00943	transcriptional regulator (AraC family)	NA
UHGV-0154802_3	Pfam	PF02311	AraC-like ligand binding domain	AraC_binding
UHGV-0154802_3	Pfam	PF12833	Helix-turn-helix domain	HTH_18
UHGV-0154802_3	COG	COG1917	Cupin domain protein related to quercetin dioxygenase	NA
UHGV-0154802_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0154802_4	UniRef90	UniRef90_R6MQL3	DNA-binding helix-turn-helix protein	NA
UHGV-0154802_4	eggNOG-mapper	445972.ANACOL_00212	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0154802_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0154802_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0154802_4	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0154802_5	UniRef90	UniRef90_UPI00195A48CC	helix-turn-helix domain-containing protein	NA
UHGV-0154802_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0154802_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0154802_5	Structural annotation	PF13443, NF000090, COG1476	NA	NA
UHGV-0154802_6	UniRef90	UniRef90_UPI00137AA8A9	helix-turn-helix domain-containing protein	NA
UHGV-0154802_6	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-0154802_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0154802_6	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0154802_8	PHROG	phrog_38037	NA	unknown function
UHGV-0154802_12	PHROG	phrog_4068	NA	unknown function
UHGV-0154802_12	Structural annotation	PF06657	NA	NA
UHGV-0154802_14	Structural annotation	PF21611, NF038178	NA	NA
UHGV-0154802_15	PHROG	phrog_1076	FmdB-like transcriptional regulator	transcription regulation
UHGV-0154802_15	UniRef90	UniRef90_R6LWP8	LPD18 domain-containing protein	NA
UHGV-0154802_15	eggNOG-mapper	693746.OBV_p-00470	Zn peptidase	NA
UHGV-0154802_15	Pfam	PF18832	Large polyvalent protein-associated domain 18	LPD18
UHGV-0154802_15	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0154802_17	PHROG	phrog_14030	NA	unknown function
UHGV-0154802_17	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0154802_17	eggNOG-mapper	1095750.HMPREF9970_2291	repeat protein	NA
UHGV-0154802_17	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0154802_18	PHROG	phrog_6918	holin	lysis
UHGV-0154802_18	UniRef90	UniRef90_R6LQE1	Putative phage holin LL-H family	NA
UHGV-0154802_18	eggNOG-mapper	552398.HMPREF0866_03092	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0154802_18	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0154802_18	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0154802_18	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0154802_19	PHROG	phrog_9428	NA	unknown function
UHGV-0154802_19	UniRef90	UniRef90_UPI0019685E42	serine/threonine protein kinase	NA
UHGV-0154802_19	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-0154802_20	PHROG	phrog_1382	NA	unknown function
UHGV-0154802_20	eggNOG-mapper	445972.ANACOL_00202	NA	NA
UHGV-0154802_20	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0154802_21	PHROG	phrog_1382	NA	unknown function
UHGV-0154802_21	UniRef90	UniRef90_A0A844DM60	ASCH domain-containing protein	NA
UHGV-0154802_21	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0154802_21	Structural annotation	NF040910	NA	NA
UHGV-0154802_23	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0154802_23	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0154802_23	UniRef90	UniRef90_R6MQT9	Putative reverse transcriptase	NA
UHGV-0154802_23	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-0154802_23	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0154802_23	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0154802_23	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0154802_24	PHROG	phrog_5302	tail protein	tail
UHGV-0154802_24	UniRef90	UniRef90_R6M197	Ig-like_bact domain-containing protein	NA
UHGV-0154802_24	eggNOG-mapper	1203606.HMPREF1526_00261	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0154802_24	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0154802_24	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0154802_24	Structural annotation	PF07210, COG1262	NA	NA
UHGV-0154802_25	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0154802_25	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0154802_26	KOfam	K24451	zim; modification methylase	NA
UHGV-0154802_26	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0154802_26	UniRef90	UniRef90_A0A837AM10	Methyltransferase (Fragment)	NA
UHGV-0154802_26	eggNOG-mapper	1357275.AVEL02000151_gene1536	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0154802_26	PADLOC	MTase_II_00173	Type II methyltransferase	RM
UHGV-0154802_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0154802_26	COG	COG0863	DNA modification methylase	NA
UHGV-0154802_30	PHROG	phrog_2164	NA	unknown function
UHGV-0154802_31	PHROG	phrog_5984	NA	unknown function
UHGV-0154802_31	eggNOG-mapper	1203606.HMPREF1526_01893	NA	NA
UHGV-0154802_31	Structural annotation	PF19561	NA	NA
UHGV-0154802_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0154802_32	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0154802_32	UniRef90	UniRef90_UPI001F223851	ParB/RepB/Spo0J family partition protein	NA
UHGV-0154802_32	eggNOG-mapper	718252.FP2_00920	ParB-like nuclease domain	NA
UHGV-0154802_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0154802_32	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0154802_32	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0154802_32	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0154802_33	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0154802_33	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0154802_33	eggNOG-mapper	445972.ANACOL_00160	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0154802_33	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0154802_33	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0154802_33	Pfam	PF13921	Myb-like DNA-binding domain	Myb_DNA-bind_6
UHGV-0154802_33	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0154802_33	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0154802_34	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0154802_34	PHROG	phrog_5696	NA	unknown function
UHGV-0154802_34	UniRef90	UniRef90_R6LQQ9	N6_Mtase domain-containing protein	NA
UHGV-0154802_34	eggNOG-mapper	445972.ANACOL_00159	N-6 DNA Methylase	NA
UHGV-0154802_34	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0154802_34	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0154802_34	Structural annotation	COG0286	NA	NA
UHGV-0154802_36	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0154802_36	PHROG	phrog_36563	NA	unknown function
UHGV-0154802_36	UniRef90	UniRef90_R6LLA6	Ftsk gamma domain protein	NA
UHGV-0154802_36	eggNOG-mapper	445972.ANACOL_00157	ftsk spoiiie	NA
UHGV-0154802_36	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0154802_36	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0154802_36	Structural annotation	PF09397, MF_01586, NF006814, COG1846	NA	NA
UHGV-0154802_37	KOfam	K03700	recU; recombination protein U	NA
UHGV-0154802_37	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0154802_37	UniRef90	UniRef90_R6MQX5	Holliday junction resolvase RecU	NA
UHGV-0154802_37	eggNOG-mapper	445972.ANACOL_00156	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0154802_37	Pfam	PF03838	Recombination protein U	RecU
UHGV-0154802_37	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0154802_37	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0154802_38	PHROG	phrog_38339	NA	unknown function
UHGV-0154802_38	UniRef90	UniRef90_R6M1C9	Spore cortex-lytic enzyme	NA
UHGV-0154802_38	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0154802_38	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0154802_38	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0154802_39	PHROG	phrog_9804	NA	unknown function
UHGV-0154802_39	UniRef90	UniRef90_R6LQQ5	Inhibitor_G39P domain-containing protein	NA
UHGV-0154802_39	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0154802_39	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0154802_39	Structural annotation	PF11417	NA	NA
UHGV-0154802_40	PHROG	phrog_1163	NA	unknown function
UHGV-0154802_40	UniRef90	UniRef90_R6LWZ9	DnaD and phage-associated domain	NA
UHGV-0154802_40	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0154802_40	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0154802_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0154802_40	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0154802_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0154802_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0154802_41	UniRef90	UniRef90_R6LLA3	Single-stranded DNA-binding protein	NA
UHGV-0154802_41	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0154802_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0154802_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0154802_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0154802_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0154802_41	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0154802_43	PHROG	phrog_1934	NA	unknown function
UHGV-0154802_43	UniRef90	UniRef90_UPI0002AC066B	zinc-finger-containing protein	NA
UHGV-0154802_43	eggNOG-mapper	445972.ANACOL_00149	COG NOG19595 non supervised orthologous group	NA
UHGV-0154802_43	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0154802_43	Structural annotation	PF11672	NA	NA
UHGV-0154802_44	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0154802_44	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0154802_44	Structural annotation	PF05772	NA	NA
UHGV-0154802_45	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0154802_45	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0154802_45	UniRef90	UniRef90_R6LWZ4	Lactamase_B domain-containing protein	NA
UHGV-0154802_45	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0154802_45	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0154802_45	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0154802_45	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0154802_46	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0154802_46	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0154802_46	UniRef90	UniRef90_R6LL98	Phage RecT family recombinase	NA
UHGV-0154802_46	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0154802_46	Pfam	PF03837	RecT family	RecT
UHGV-0154802_46	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0154802_46	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0154802_46	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0154802_47	PHROG	phrog_674	NA	unknown function
UHGV-0154802_47	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0154802_47	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0154802_47	Pfam	PF07083	NA	DUF1351
UHGV-0154802_47	Structural annotation	PF07083	NA	NA
UHGV-0154802_48	Structural annotation	PF17764	NA	NA
UHGV-0154802_49	PHROG	phrog_28990	NA	unknown function
UHGV-0154802_53	UniRef90	UniRef90_A0A3D4QQE0	Phage repressor protein	NA
UHGV-0154802_53	eggNOG-mapper	663952.SDD27957_09355	NA	NA
UHGV-0154802_53	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0154802_53	Structural annotation	PF21291, NF041951, COG3655	NA	NA
UHGV-0154802_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0154802_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0154802_54	UniRef90	UniRef90_A0A2V2FME6	Transcriptional regulator	NA
UHGV-0154802_54	eggNOG-mapper	683837.lse_1630	Helix-turn-helix XRE-family like proteins	NA
UHGV-0154802_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0154802_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0154802_54	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0154802_56	UniRef90	UniRef90_UPI001C10501F	SWIM zinc finger domain-containing protein	NA
UHGV-0154802_56	eggNOG-mapper	1378168.N510_03179	SWIM zinc finger	NA
UHGV-0154802_56	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-0154802_57	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0154802_57	PHROG	phrog_95	integrase	integration and excision
UHGV-0154802_57	UniRef90	UniRef90_UPI00137A0BEF	recombinase family protein	NA
UHGV-0154802_57	eggNOG-mapper	445972.ANACOL_00133	Resolvase, N terminal domain	NA
UHGV-0154802_57	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0154802_57	Pfam	PF07508	Recombinase	Recombinase
UHGV-0154802_57	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0154802_57	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0154802_57	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA