UHGV-0154842

Genome information

Genome length 23,969 bps

CDS count 26

Completeness 61.88% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154842
vOTU ID	vOTU-027665
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_498385
BioSample	SAMN06110293
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.8
Jumbo phage	No

Genome content
Genome length	23,969 bps
GC content	32.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	91.36%
Average CDS length	844.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154842_1	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0154842_1	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0154842_1	eggNOG-mapper	1321814.HMPREF9089_00921	NA	NA
UHGV-0154842_1	Structural annotation	PF21578	NA	NA
UHGV-0154842_2	Structural annotation	PF02996	NA	NA
UHGV-0154842_3	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0154842_3	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0154842_3	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-0154842_3	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0154842_3	Structural annotation	PF07141	NA	NA
UHGV-0154842_4	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0154842_4	UniRef90	UniRef90_R6NCD1	HNH domain-containing protein	NA
UHGV-0154842_4	eggNOG-mapper	97138.C820_00619	HNH endonuclease	NA
UHGV-0154842_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0154842_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0154842_4	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0154842_6	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0154842_6	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-0154842_6	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0154842_6	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0154842_6	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0154842_6	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0154842_6	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0154842_7	PHROG	phrog_12	portal protein	head and packaging
UHGV-0154842_7	UniRef90	UniRef90_A0A6N2W8E6	Phage portal protein	NA
UHGV-0154842_7	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0154842_7	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0154842_7	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0154842_7	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0154842_8	KOfam	K06904	NA	NA
UHGV-0154842_8	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0154842_8	UniRef90	UniRef90_R5W1K4	Putative phage prohead protease	NA
UHGV-0154842_8	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0154842_8	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0154842_8	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0154842_8	COG	COG3740	Phage head maturation protease	NA
UHGV-0154842_8	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0154842_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0154842_9	UniRef90	UniRef90_R6NN39	Phage major capsid protein HK97 family	NA
UHGV-0154842_9	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0154842_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0154842_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0154842_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0154842_9	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0154842_10	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0154842_10	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0154842_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0154842_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0154842_11	UniRef90	UniRef90_A0A416HJI0	Head-tail adaptor protein	NA
UHGV-0154842_11	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0154842_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0154842_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0154842_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0154842_12	Structural annotation	TIGR01725	NA	NA
UHGV-0154842_13	Structural annotation	PF05657	NA	NA
UHGV-0154842_14	PHROG	phrog_88	major tail protein	tail
UHGV-0154842_14	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0154842_14	eggNOG-mapper	1120971.AUCA01000037_gene2904	Phage tail tube protein	NA
UHGV-0154842_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0154842_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0154842_16	PHROG	phrog_5218	NA	unknown function
UHGV-0154842_16	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-0154842_16	eggNOG-mapper	1536774.H70357_10670	minor tail protein	NA
UHGV-0154842_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0154842_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0154842_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0154842_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0154842_17	UniRef90	UniRef90_UPI001D088A46	phage tail family protein	NA
UHGV-0154842_17	eggNOG-mapper	641112.ACOK01000108_gene1808	Phage tail protein	NA
UHGV-0154842_17	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0154842_17	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0154842_18	PHROG	phrog_538	minor tail protein	tail
UHGV-0154842_18	UniRef90	UniRef90_UPI001D076D06	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0154842_18	eggNOG-mapper	428125.CLOLEP_01424	NA	NA
UHGV-0154842_18	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0154842_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0154842_19	PHROG	phrog_1220	head protein	head and packaging
UHGV-0154842_19	UniRef90	UniRef90_A0A7M4B3C1	Phage structural protein	NA
UHGV-0154842_19	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-0154842_23	PHROG	phrog_918	NA	unknown function
UHGV-0154842_23	UniRef90	UniRef90_UPI001F22DD3C	NA	NA
UHGV-0154842_23	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0154842_23	Pfam	PF19791	NA	DUF6275
UHGV-0154842_23	Structural annotation	PF19791	NA	NA
UHGV-0154842_24	PHROG	phrog_199	holin	lysis
UHGV-0154842_24	UniRef90	UniRef90_A0A348ZBJ4	Holin	NA
UHGV-0154842_24	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0154842_24	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0154842_24	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0154842_24	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0154842_24	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0154842_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0154842_25	PHROG	phrog_291	endolysin	lysis
UHGV-0154842_25	UniRef90	UniRef90_R7NMS6	Glycosyl hydrolase family 25	NA
UHGV-0154842_25	eggNOG-mapper	877420.ATVW01000004_gene383	Glycosyl hydrolases family 25	NA
UHGV-0154842_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0154842_25	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0154842_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0154842_25	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-0154842_26	PHROG	phrog_2104	NA	unknown function
UHGV-0154842_26	UniRef90	UniRef90_A0A412ULX9	XRE family transcriptional regulator	NA
UHGV-0154842_26	eggNOG-mapper	411459.RUMOBE_01706	NA	NA
UHGV-0154842_26	Pfam	PF01381	Helix-turn-helix	HTH_3