UHGV-0154899

Genome information

vOTU vOTU-019452

Genome length 37,987 bps

CDS count 58

Completeness 89.37% (medium-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0154899
vOTU ID	vOTU-019452
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_446161
BioSample	SAMN05971428
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	94.91
Jumbo phage	No

Genome content
Genome length	37,987 bps
GC content	49.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.05%
Average CDS length	598.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0154899_1	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0154899_1	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-0154899_3	PHROG	phrog_2837	tail protein	tail
UHGV-0154899_3	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0154899_3	Pfam	PF14301	NA	DUF4376
UHGV-0154899_3	Structural annotation	PF14301, COG1382	NA	NA
UHGV-0154899_6	UniRef90	UniRef90_A0A7G9B8H5	Tail fiber protein	NA
UHGV-0154899_6	eggNOG-mapper	1064535.MELS_1932	Membrane	NA
UHGV-0154899_6	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0154899_6	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0154899_8	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0154899_8	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0154899_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0154899_9	PHROG	phrog_291	endolysin	lysis
UHGV-0154899_9	UniRef90	UniRef90_R6AN85	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0154899_9	eggNOG-mapper	1273103.NM10_01741	Glycosyl hydrolase family 25	NA
UHGV-0154899_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0154899_9	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0154899_9	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0154899_10	UniRef90	UniRef90_R6AE25	Conserved domain protein	NA
UHGV-0154899_10	eggNOG-mapper	592028.GCWU000321_01470	Bacteriophage holin family	NA
UHGV-0154899_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0154899_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0154899_12	PHROG	phrog_32639	NA	unknown function
UHGV-0154899_12	Structural annotation	PF21611	NA	NA
UHGV-0154899_13	KOfam	K14059	int; integrase	NA
UHGV-0154899_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0154899_13	UniRef90	UniRef90_A0A3B9DV66	Recombinase XerC	NA
UHGV-0154899_13	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0154899_13	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0154899_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0154899_13	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0154899_13	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0154899_14	eggNOG-mapper	1111454.HMPREF1250_0201	tail collar domain protein	NA
UHGV-0154899_14	COG	COG4675	Phage tail collar domain	NA
UHGV-0154899_14	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0154899_15	PHROG	phrog_521	tail protein	tail
UHGV-0154899_15	UniRef90	UniRef90_U7UIV1	PF10076 family protein	NA
UHGV-0154899_15	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-0154899_15	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0154899_15	COG	COG3778	NA	NA
UHGV-0154899_15	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0154899_16	PHROG	phrog_6	baseplate protein	tail
UHGV-0154899_16	UniRef90	UniRef90_U7UJ67	Baseplate J-like protein	NA
UHGV-0154899_16	eggNOG-mapper	1111454.HMPREF1250_0199	Baseplate J-like protein	NA
UHGV-0154899_16	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0154899_16	COG	COG3299	NA	NA
UHGV-0154899_16	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0154899_17	PHROG	phrog_120	baseplate protein	tail
UHGV-0154899_17	UniRef90	UniRef90_A0A0J6WX87	NA	NA
UHGV-0154899_17	eggNOG-mapper	1273103.NM10_01004	NA	NA
UHGV-0154899_17	Pfam	PF10934	NA	DUF2634
UHGV-0154899_17	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0154899_18	PHROG	phrog_579	NA	unknown function
UHGV-0154899_18	UniRef90	UniRef90_A0A413QUA5	NA	NA
UHGV-0154899_18	eggNOG-mapper	1273103.NM10_01009	NA	NA
UHGV-0154899_18	Pfam	PF10844	NA	DUF2577
UHGV-0154899_18	Structural annotation	PF10844	NA	NA
UHGV-0154899_19	PHROG	phrog_400	tail protein	tail
UHGV-0154899_19	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0154899_19	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0154899_19	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0154899_19	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0154899_20	PHROG	phrog_380	endolysin	lysis
UHGV-0154899_20	UniRef90	UniRef90_A0A2G5X817	LysM domain-containing protein	NA
UHGV-0154899_20	eggNOG-mapper	1273103.NM10_01019	LysM domain	NA
UHGV-0154899_20	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0154899_20	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0154899_21	PHROG	phrog_16692	NA	unknown function
UHGV-0154899_21	UniRef90	UniRef90_U7ULG1	Tail tape measure protein, TIGR01760 family	NA
UHGV-0154899_21	eggNOG-mapper	1111454.HMPREF1250_0194	Phage-related minor tail protein	NA
UHGV-0154899_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0154899_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0154899_21	COG	COG5283	Phage-related tail protein	NA
UHGV-0154899_21	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0154899_22	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0154899_22	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0154899_22	eggNOG-mapper	1111454.HMPREF1250_0193	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0154899_22	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0154899_22	Structural annotation	PF08890	NA	NA
UHGV-0154899_23	PHROG	phrog_365	tail protein	tail
UHGV-0154899_23	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-0154899_23	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0154899_23	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0154899_23	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0154899_24	PHROG	phrog_1480	tail sheath	tail
UHGV-0154899_24	UniRef90	UniRef90_A0A269TCE8	Phage tail sheath protein	NA
UHGV-0154899_24	eggNOG-mapper	1273103.NM10_01039	Phage tail sheath C-terminal domain	NA
UHGV-0154899_24	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0154899_24	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0154899_24	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0154899_25	PHROG	phrog_525	NA	unknown function
UHGV-0154899_25	UniRef90	UniRef90_UPI0011A26FBC	NA	NA
UHGV-0154899_25	eggNOG-mapper	883156.HMPREF9282_00956	NA	NA
UHGV-0154899_25	Pfam	PF20765	NA	DUF6838
UHGV-0154899_25	Structural annotation	PF20765	NA	NA
UHGV-0154899_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0154899_26	UniRef90	UniRef90_A0A1G9QVC1	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0154899_26	eggNOG-mapper	1273103.NM10_01049	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0154899_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0154899_26	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0154899_27	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0154899_27	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0154899_27	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0154899_28	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0154899_28	eggNOG-mapper	1111454.HMPREF1250_0188	NA	NA
UHGV-0154899_29	PHROG	phrog_3711	NA	unknown function
UHGV-0154899_31	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0154899_31	UniRef90	UniRef90_UPI00195C1C3E	minor capsid protein	NA
UHGV-0154899_31	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0154899_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0154899_31	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0154899_31	COG	COG2369	NA	NA
UHGV-0154899_31	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0154899_32	PHROG	phrog_247	major head protein	head and packaging
UHGV-0154899_32	UniRef90	UniRef90_S7HTI1	Coat protein	NA
UHGV-0154899_32	eggNOG-mapper	1273103.NM10_01069	NA	NA
UHGV-0154899_32	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0154899_32	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0154899_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0154899_33	UniRef90	UniRef90_A0A0J6WUK7	Phage minor structural protein GP20	NA
UHGV-0154899_33	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-0154899_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0154899_33	Structural annotation	PF06810	NA	NA
UHGV-0154899_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0154899_34	UniRef90	UniRef90_S7J9T3	SPP1 family phage portal protein	NA
UHGV-0154899_34	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0154899_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0154899_34	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0154899_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0154899_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0154899_35	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0154899_35	UniRef90	UniRef90_A0A3B9DUU0	PBSX family phage terminase large subunit	NA
UHGV-0154899_35	eggNOG-mapper	1123250.KB908417_gene648	Phage terminase large subunit	NA
UHGV-0154899_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0154899_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0154899_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0154899_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0154899_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0154899_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0154899_36	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0154899_36	UniRef90	UniRef90_R6AGU2	Phage terminase small subunit	NA
UHGV-0154899_36	eggNOG-mapper	1321779.HMPREF1984_01312	terminase small subunit	NA
UHGV-0154899_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0154899_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0154899_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0154899_37	PHROG	phrog_3243	NA	unknown function
UHGV-0154899_37	eggNOG-mapper	568816.Acin_1295	NA	NA
UHGV-0154899_37	Structural annotation	PF17185, MF_00075, NF007814, COG0361	NA	NA
UHGV-0154899_38	Structural annotation	PF08281, TIGR01636, COG2739	NA	NA
UHGV-0154899_39	UniRef90	UniRef90_A0A3B9DVA1	MYND-type domain-containing protein	NA
UHGV-0154899_40	PHROG	phrog_16126	NA	unknown function
UHGV-0154899_41	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0154899_41	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0154899_41	UniRef90	UniRef90_R6AUC5	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0154899_41	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0154899_41	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0154899_41	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0154899_41	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0154899_44	Structural annotation	PF05406	NA	NA
UHGV-0154899_45	PHROG	phrog_7839	NA	unknown function
UHGV-0154899_45	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-0154899_45	Structural annotation	PF08860	NA	NA
UHGV-0154899_46	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0154899_46	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0154899_46	UniRef90	UniRef90_R6AUC1	Primase C-terminal domain protein	NA
UHGV-0154899_46	eggNOG-mapper	1273103.NM10_06846	Primase C terminal 2 (PriCT-2)	NA
UHGV-0154899_46	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0154899_46	Pfam	PF13481	AAA domain	AAA_25
UHGV-0154899_46	COG	COG3598	RecA-family ATPase	NA
UHGV-0154899_46	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0154899_47	PHROG	phrog_2698	NA	unknown function
UHGV-0154899_47	UniRef90	UniRef90_A0A174PNQ6	NA	NA
UHGV-0154899_47	Structural annotation	PF05037, NF007495	NA	NA
UHGV-0154899_48	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0154899_48	UniRef90	UniRef90_UPI000F633C17	ATP-binding protein	NA
UHGV-0154899_48	eggNOG-mapper	910314.HMPREF9220_0634	AAA domain	NA
UHGV-0154899_48	Pfam	PF13479	AAA domain	AAA_24
UHGV-0154899_48	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0154899_49	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0154899_49	UniRef90	UniRef90_R6ADZ8	Siphovirus Gp157	NA
UHGV-0154899_49	eggNOG-mapper	910314.HMPREF9220_0635	Siphovirus Gp157	NA
UHGV-0154899_49	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0154899_49	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0154899_52	Structural annotation	PF17600	NA	NA
UHGV-0154899_53	PHROG	phrog_31911	NA	unknown function
UHGV-0154899_53	UniRef90	UniRef90_A0A1C5SJ26	MYND finger	NA
UHGV-0154899_53	eggNOG-mapper	1122217.KB899585_gene226	NA	NA
UHGV-0154899_58	UniRef90	UniRef90_A0A7X2T9I7	NA	NA
UHGV-0154899_58	eggNOG-mapper	1273103.NM10_03001	NA	NA
UHGV-0154899_58	Pfam	PF05339	NA	DUF739
UHGV-0154899_58	Structural annotation	PF05339, NF002773, COG1476	NA	NA