UHGV-0155048

Genome information

Genome length 27,351 bps

CDS count 36

Completeness 60.94% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155048
vOTU ID	vOTU-027675
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_493820
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.75
Jumbo phage	No

Genome content
Genome length	27,351 bps
GC content	50.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	95.23%
Average CDS length	725.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155048_1	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0155048_1	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0155048_1	UniRef90	UniRef90_A0A7X8QYB2	POLAc domain-containing protein (Fragment)	NA
UHGV-0155048_1	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-0155048_1	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0155048_1	Structural annotation	PF01612, MF_04101, NF038380, COG0749	NA	NA
UHGV-0155048_3	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0155048_3	UniRef90	UniRef90_A0A329UW53	NA	NA
UHGV-0155048_3	eggNOG-mapper	1203606.HMPREF1526_00235	NA	NA
UHGV-0155048_3	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0155048_3	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0155048_4	Structural annotation	PF04325	NA	NA
UHGV-0155048_5	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0155048_5	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155048_5	UniRef90	UniRef90_A0A3D5I8Y1	NA	NA
UHGV-0155048_5	eggNOG-mapper	1449126.JQKL01000006_gene838	NA	NA
UHGV-0155048_5	Pfam	PF10926	NA	DUF2800
UHGV-0155048_5	COG	COG2887	RecB family exonuclease	NA
UHGV-0155048_5	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0155048_6	PHROG	phrog_18562	NA	unknown function
UHGV-0155048_6	eggNOG-mapper	1120971.AUCA01000043_gene1180	NA	NA
UHGV-0155048_7	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0155048_7	PHROG	phrog_19349	NA	unknown function
UHGV-0155048_7	UniRef90	UniRef90_A0A7X5IP30	SLT domain-containing protein	NA
UHGV-0155048_7	eggNOG-mapper	742740.HMPREF9474_02375	lytic transglycosylase activity	NA
UHGV-0155048_7	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0155048_7	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0155048_7	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-0155048_9	UniRef90	UniRef90_UPI0013796667	helix-turn-helix domain-containing protein	NA
UHGV-0155048_9	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0155048_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0155048_10	UniRef90	UniRef90_A0A372V3Y4	XRE family transcriptional regulator	NA
UHGV-0155048_10	eggNOG-mapper	1158602.I590_02536	Helix-turn-helix XRE-family like proteins	NA
UHGV-0155048_10	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0155048_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0155048_11	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0155048_11	PHROG	phrog_19856	NA	unknown function
UHGV-0155048_11	UniRef90	UniRef90_A0A358PS54	Restriction endonuclease	NA
UHGV-0155048_11	eggNOG-mapper	1392491.JIAE01000001_gene1364	Restriction endonuclease	NA
UHGV-0155048_11	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0155048_11	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0155048_11	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0155048_12	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0155048_12	PHROG	phrog_95	integrase	integration and excision
UHGV-0155048_12	UniRef90	UniRef90_UPI001D07FD01	recombinase family protein	NA
UHGV-0155048_12	eggNOG-mapper	903814.ELI_1010	Resolvase, N terminal domain	NA
UHGV-0155048_12	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0155048_12	Pfam	PF07508	Recombinase	Recombinase
UHGV-0155048_12	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0155048_12	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0155048_12	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0155048_13	PHROG	phrog_10091	holin	lysis
UHGV-0155048_13	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-0155048_13	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0155048_13	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0155048_13	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0155048_13	COG	COG5546	NA	NA
UHGV-0155048_13	Structural annotation	COG5546	NA	NA
UHGV-0155048_14	KOfam	K03749	dedD; DedD protein	NA
UHGV-0155048_14	PHROG	phrog_20388	endolysin	lysis
UHGV-0155048_14	UniRef90	UniRef90_A0A1C5N059	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0155048_14	eggNOG-mapper	665956.HMPREF1032_00684	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0155048_14	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0155048_14	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0155048_14	Pfam	PF05036	SPOR domain	SPOR
UHGV-0155048_14	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0155048_14	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0155048_14	Structural annotation	PF08230, PF01832, PF10030, NF038016, TIGR02594, COG1705, COG4322	NA	NA
UHGV-0155048_15	PHROG	phrog_1863	NA	unknown function
UHGV-0155048_15	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0155048_16	PHROG	phrog_1382	NA	unknown function
UHGV-0155048_16	eggNOG-mapper	665950.HMPREF1025_01332	NA	NA
UHGV-0155048_16	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0155048_17	PHROG	phrog_1382	NA	unknown function
UHGV-0155048_17	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0155048_17	Structural annotation	NF040910	NA	NA
UHGV-0155048_18	eggNOG-mapper	742740.HMPREF9474_02256	NA	NA
UHGV-0155048_18	Structural annotation	PF07238	NA	NA
UHGV-0155048_19	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0155048_19	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0155048_19	UniRef90	UniRef90_A0A1C5MZK8	Retron-type reverse transcriptase	NA
UHGV-0155048_19	eggNOG-mapper	742740.HMPREF9474_02253	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0155048_19	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0155048_19	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0155048_19	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0155048_19	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0155048_20	eggNOG-mapper	97139.C824_00240	NA	NA
UHGV-0155048_20	Structural annotation	PF05635, NF008912	NA	NA
UHGV-0155048_21	UniRef90	UniRef90_A0A1C5MZC0	NA	NA
UHGV-0155048_21	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-0155048_21	Pfam	PF19789	NA	DUF6273
UHGV-0155048_22	PHROG	phrog_25620	tail collar fiber protein	tail
UHGV-0155048_22	eggNOG-mapper	365659.smi_0469	NA	NA
UHGV-0155048_23	PHROG	phrog_18725	NA	unknown function
UHGV-0155048_23	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0155048_24	PHROG	phrog_13879	NA	unknown function
UHGV-0155048_24	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-0155048_24	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0155048_25	PHROG	phrog_1194	NA	unknown function
UHGV-0155048_25	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0155048_25	Pfam	PF20458	NA	DUF6711
UHGV-0155048_25	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0155048_26	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0155048_26	UniRef90	UniRef90_A0A1C6L0H4	Phage-related protein	NA
UHGV-0155048_26	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0155048_26	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0155048_27	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0155048_28	UniRef90	UniRef90_A0A1C0ADY7	NA	NA
UHGV-0155048_28	eggNOG-mapper	1211844.CBLM010000023_gene988	NA	NA
UHGV-0155048_28	Pfam	PF16478	NA	DUF5055
UHGV-0155048_28	Structural annotation	PF16478	NA	NA
UHGV-0155048_29	PHROG	phrog_158	major tail protein	tail
UHGV-0155048_29	UniRef90	UniRef90_D7GNW1	Phage tail protein	NA
UHGV-0155048_29	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0155048_29	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0155048_29	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0155048_30	PHROG	phrog_78	tail terminator	connector
UHGV-0155048_30	eggNOG-mapper	1121333.JMLH01000047_gene1014	NA	NA
UHGV-0155048_30	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0155048_31	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0155048_31	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0155048_32	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0155048_33	UniRef90	UniRef90_D7GNV9	Phage QLRG family, putative DNA packaging	NA
UHGV-0155048_33	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0155048_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0155048_33	Structural annotation	TIGR01560	NA	NA
UHGV-0155048_34	PHROG	phrog_544	major head protein	head and packaging
UHGV-0155048_34	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-0155048_34	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0155048_34	Structural annotation	PF06673, MF_04119, TIGR04387, COG4653	NA	NA