UHGV-0155170

Genome information

Genome length 34,184 bps

CDS count 56

Completeness 97.10% (high-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155170
vOTU ID	vOTU-010614
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_460278
BioSample	SAMN05971493
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.6
Jumbo phage	No

Genome content
Genome length	34,184 bps
GC content	43.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.35%
Average CDS length	567.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155170_1	KOfam	K07486	K07486; transposase	NA
UHGV-0155170_1	PHROG	phrog_2199	transposase	integration and excision
UHGV-0155170_1	UniRef90	UniRef90_C4Z9N1	Transposase	NA
UHGV-0155170_1	eggNOG-mapper	180332.JTGN01000001_gene4600	PFAM transposase IS116 IS110 IS902	NA
UHGV-0155170_1	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0155170_1	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0155170_1	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-0155170_1	COG	COG3547	Transposase	NA
UHGV-0155170_1	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-0155170_2	PHROG	phrog_1129	holin	lysis
UHGV-0155170_2	UniRef90	UniRef90_A0A3R6U6I1	Enolase	NA
UHGV-0155170_2	eggNOG-mapper	1321782.HMPREF1986_00360	NA	NA
UHGV-0155170_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0155170_2	Structural annotation	PF06946	NA	NA
UHGV-0155170_3	PHROG	phrog_4105	NA	unknown function
UHGV-0155170_3	eggNOG-mapper	1158604.I591_00415	NA	NA
UHGV-0155170_4	PHROG	phrog_20274	NA	unknown function
UHGV-0155170_4	UniRef90	UniRef90_D7GNX6	Predicted membrane protein	NA
UHGV-0155170_4	eggNOG-mapper	411902.CLOBOL_05645	NA	NA
UHGV-0155170_4	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0155170_4	COG	COG4905	NA	NA
UHGV-0155170_4	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0155170_5	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0155170_5	UniRef90	UniRef90_A0A417WCN8	Acyl carrier protein	NA
UHGV-0155170_5	eggNOG-mapper	411902.CLOBOL_05646	NA	NA
UHGV-0155170_5	Structural annotation	PF14301	NA	NA
UHGV-0155170_7	PHROG	phrog_30004	NA	unknown function
UHGV-0155170_7	UniRef90	UniRef90_UPI001D07CC57	H-type lectin domain-containing protein	NA
UHGV-0155170_8	PHROG	phrog_521	tail protein	tail
UHGV-0155170_8	UniRef90	UniRef90_A0A396MNX8	NA	NA
UHGV-0155170_8	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0155170_8	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0155170_8	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0155170_9	PHROG	phrog_6	baseplate protein	tail
UHGV-0155170_9	UniRef90	UniRef90_A0A396MU77	Phage tail protein	NA
UHGV-0155170_9	eggNOG-mapper	1095750.HMPREF9970_2282	baseplate J-like protein	NA
UHGV-0155170_9	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0155170_9	COG	COG3299	NA	NA
UHGV-0155170_9	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0155170_10	PHROG	phrog_120	baseplate protein	tail
UHGV-0155170_10	UniRef90	UniRef90_A0A396MRD3	NA	NA
UHGV-0155170_10	eggNOG-mapper	1095750.HMPREF9970_2281	NA	NA
UHGV-0155170_10	Pfam	PF10934	NA	DUF2634
UHGV-0155170_10	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0155170_10	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0155170_11	UniRef90	UniRef90_A0A849D0V2	NA	NA
UHGV-0155170_11	eggNOG-mapper	290402.Cbei_3392	NA	NA
UHGV-0155170_11	Pfam	PF10844	NA	DUF2577
UHGV-0155170_11	Structural annotation	PF10844	NA	NA
UHGV-0155170_12	PHROG	phrog_400	tail protein	tail
UHGV-0155170_12	UniRef90	UniRef90_A0A374AG17	NlpC/P60 domain-containing protein	NA
UHGV-0155170_12	eggNOG-mapper	1095750.HMPREF9970_2279	NLP P60 protein	NA
UHGV-0155170_12	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0155170_12	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0155170_13	KOfam	K21687	rpfA; resuscitation-promoting factor RpfA	NA
UHGV-0155170_13	PHROG	phrog_380	endolysin	lysis
UHGV-0155170_13	UniRef90	UniRef90_A0A396MSD0	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0155170_13	eggNOG-mapper	1095750.HMPREF9970_2278	LysM domain	NA
UHGV-0155170_13	Pfam	PF01476	LysM domain	LysM
UHGV-0155170_13	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0155170_13	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0155170_14	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0155170_14	UniRef90	UniRef90_A0A1E3U7M8	Phage tail tape measure protein	NA
UHGV-0155170_14	eggNOG-mapper	568816.Acin_1964	Phage-related minor tail protein	NA
UHGV-0155170_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0155170_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0155170_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0155170_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0155170_15	PHROG	phrog_2722	NA	unknown function
UHGV-0155170_16	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0155170_16	UniRef90	UniRef90_UPI001645A435	XkdN-like protein	NA
UHGV-0155170_16	eggNOG-mapper	1095750.HMPREF9970_2276	PFAM Phage XkdN-like protein	NA
UHGV-0155170_16	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0155170_16	Structural annotation	PF08890	NA	NA
UHGV-0155170_17	PHROG	phrog_365	tail protein	tail
UHGV-0155170_17	UniRef90	UniRef90_UPI0016451DED	phage tail tube protein	NA
UHGV-0155170_17	eggNOG-mapper	1095750.HMPREF9970_2275	Phage tail tube protein	NA
UHGV-0155170_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0155170_17	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0155170_18	PHROG	phrog_1480	tail sheath	tail
UHGV-0155170_18	UniRef90	UniRef90_A0A3A6KI88	Phage tail protein	NA
UHGV-0155170_18	eggNOG-mapper	1408324.JNJK01000006_gene1387	Phage tail sheath C-terminal domain	NA
UHGV-0155170_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0155170_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0155170_18	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0155170_19	PHROG	phrog_525	NA	unknown function
UHGV-0155170_19	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-0155170_19	Pfam	PF20765	NA	DUF6838
UHGV-0155170_19	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0155170_20	UniRef90	UniRef90_UPI0016459111	HK97 gp10 family phage protein	NA
UHGV-0155170_20	eggNOG-mapper	1095747.HMPREF1049_2007	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0155170_20	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0155170_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0155170_21	UniRef90	UniRef90_A0A373D5B6	Head-tail adaptor protein	NA
UHGV-0155170_21	eggNOG-mapper	1095750.HMPREF9970_2271	Phage head-tail joining protein	NA
UHGV-0155170_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0155170_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0155170_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0155170_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0155170_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0155170_22	UniRef90	UniRef90_A0A6P1MNU9	Phage gp6-like head-tail connector protein	NA
UHGV-0155170_22	eggNOG-mapper	397288.C806_00072	Phage gp6-like head-tail connector protein	NA
UHGV-0155170_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0155170_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0155170_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0155170_23	UniRef90	UniRef90_A0A3E3ILY6	Phage major capsid protein	NA
UHGV-0155170_23	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0155170_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0155170_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0155170_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0155170_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0155170_24	KOfam	K06904	NA	NA
UHGV-0155170_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0155170_24	UniRef90	UniRef90_UPI0018985D9B	HK97 family phage prohead protease	NA
UHGV-0155170_24	eggNOG-mapper	397288.C806_00074	Phage prohead protease, HK97 family	NA
UHGV-0155170_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0155170_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0155170_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0155170_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0155170_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0155170_25	UniRef90	UniRef90_A0A416UC13	Phage portal protein	NA
UHGV-0155170_25	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0155170_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0155170_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0155170_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0155170_25	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0155170_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0155170_26	UniRef90	UniRef90_A0A416BND4	Terminase	NA
UHGV-0155170_26	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0155170_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0155170_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0155170_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0155170_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0155170_27	UniRef90	UniRef90_UPI001898F58A	P27 family phage terminase small subunit	NA
UHGV-0155170_27	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-0155170_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0155170_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0155170_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155170_28	UniRef90	UniRef90_A0A373D5W6	HNH endonuclease	NA
UHGV-0155170_28	eggNOG-mapper	397288.C806_00078	HNH nucleases	NA
UHGV-0155170_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0155170_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0155170_29	UniRef90	UniRef90_A0A3R6Q6G3	NA	NA
UHGV-0155170_29	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0155170_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0155170_29	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0155170_30	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0155170_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0155170_30	UniRef90	UniRef90_A0A0F0C3Y7	Tyrosine recombinase XerC	NA
UHGV-0155170_30	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-0155170_30	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0155170_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0155170_30	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0155170_30	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0155170_33	PHROG	phrog_6568	NA	unknown function
UHGV-0155170_33	eggNOG-mapper	428125.CLOLEP_01394	NA	NA
UHGV-0155170_34	UniRef90	UniRef90_UPI0008BFBBEB	ribbon-helix-helix protein, CopG family	NA
UHGV-0155170_34	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0155170_37	PHROG	phrog_3886	NA	unknown function
UHGV-0155170_37	eggNOG-mapper	1298920.KI911353_gene2686	NA	NA
UHGV-0155170_38	KOfam	K03744	lemA; LemA protein	NA
UHGV-0155170_38	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0155170_38	UniRef90	UniRef90_A0A417EL55	LemA family protein	NA
UHGV-0155170_38	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0155170_38	Pfam	PF04011	LemA family	LemA
UHGV-0155170_38	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0155170_38	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0155170_41	PHROG	phrog_7566	NA	unknown function
UHGV-0155170_41	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0155170_42	PHROG	phrog_15077	NA	unknown function
UHGV-0155170_42	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-0155170_42	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0155170_42	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0155170_43	PHROG	phrog_8470	NA	unknown function
UHGV-0155170_43	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0155170_43	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0155170_43	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0155170_43	Structural annotation	PF14284	NA	NA
UHGV-0155170_44	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0155170_45	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0155170_45	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0155170_45	UniRef90	UniRef90_A0A3R6VDU4	RNase H type-1 domain-containing protein	NA
UHGV-0155170_45	eggNOG-mapper	1304877.KI519400_gene1514	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0155170_45	Pfam	PF00075	RNase H	RNase_H
UHGV-0155170_45	COG	COG0328	Ribonuclease HI	NA
UHGV-0155170_45	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0155170_46	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0155170_46	eggNOG-mapper	610130.Closa_0713	NA	NA
UHGV-0155170_46	Structural annotation	PF21578	NA	NA
UHGV-0155170_48	UniRef90	UniRef90_A0A413LWC0	DNA-binding protein	NA
UHGV-0155170_48	eggNOG-mapper	646529.Desaci_3040	TIGRFAM DNA binding domain, excisionase family	NA
UHGV-0155170_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0155170_54	UniRef90	UniRef90_R7A0K7	XRE family Transcriptional regulator	NA
UHGV-0155170_54	eggNOG-mapper	1378168.N510_03177	sequence-specific DNA binding	NA
UHGV-0155170_54	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0155170_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0155170_54	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0155170_55	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0155170_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0155170_55	UniRef90	UniRef90_A0A349QMZ5	HTH cro/C1-type domain-containing protein	NA
UHGV-0155170_55	eggNOG-mapper	1235793.C809_02627	Helix-turn-helix XRE-family like proteins	NA
UHGV-0155170_55	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0155170_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155170_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0155170_55	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0155170_56	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0155170_56	UniRef90	UniRef90_A0A174J1E0	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0155170_56	eggNOG-mapper	411469.EUBHAL_00999	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0155170_56	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0155170_56	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0155170_56	Structural annotation	PF07927, COG1724	NA	NA