UHGV-0155196

Genome information

Genome length 35,109 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155196
vOTU ID	vOTU-000942
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_479911
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.18
Jumbo phage	No

Genome content
Genome length	35,109 bps
GC content	61.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.93%
Average CDS length	626.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155196_1	PHROG	phrog_38832	NA	unknown function
UHGV-0155196_1	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0155196_3	PHROG	phrog_3136	NA	unknown function
UHGV-0155196_3	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0155196_3	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0155196_3	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0155196_4	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0155196_4	Pfam	PF04448	NA	DUF551
UHGV-0155196_7	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0155196_7	PHROG	phrog_27290	NA	unknown function
UHGV-0155196_7	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-0155196_7	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0155196_7	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0155196_7	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0155196_7	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0155196_8	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0155196_8	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0155196_8	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0155196_8	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0155196_8	Pfam	PF13614	AAA domain	AAA_31
UHGV-0155196_8	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0155196_8	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0155196_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0155196_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0155196_10	UniRef90	UniRef90_A0A1Y3RP11	DNA helicase	NA
UHGV-0155196_10	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0155196_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0155196_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0155196_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0155196_10	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0155196_11	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0155196_11	UniRef90	UniRef90_UPI001F170B82	helix-turn-helix domain-containing protein	NA
UHGV-0155196_11	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0155196_11	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0155196_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0155196_11	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0155196_13	Structural annotation	PF21327	NA	NA
UHGV-0155196_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0155196_15	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0155196_15	UniRef90	UniRef90_G9YL68	DNA-binding helix-turn-helix protein	NA
UHGV-0155196_15	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0155196_15	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0155196_15	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0155196_15	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0155196_16	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0155196_16	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0155196_16	UniRef90	UniRef90_UPI000F0D19B9	helix-turn-helix domain-containing protein	NA
UHGV-0155196_16	eggNOG-mapper	1410650.JHWL01000006_gene1493	sequence-specific DNA binding	NA
UHGV-0155196_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155196_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0155196_16	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0155196_17	UniRef90	UniRef90_N1ZLF0	HTH cro/C1-type domain-containing protein	NA
UHGV-0155196_17	eggNOG-mapper	397291.C804_05807	sequence-specific DNA binding	NA
UHGV-0155196_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0155196_17	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0155196_18	Structural annotation	PF14947, NF041230, COG3432	NA	NA
UHGV-0155196_20	UniRef90	UniRef90_A0A1Y3ZTC9	HTH cro/C1-type domain-containing protein	NA
UHGV-0155196_20	eggNOG-mapper	1235797.C816_00878	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0155196_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155196_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0155196_20	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0155196_22	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0155196_22	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0155196_23	KOfam	K14059	int; integrase	NA
UHGV-0155196_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0155196_23	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-0155196_23	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0155196_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0155196_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0155196_23	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0155196_24	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0155196_24	PHROG	phrog_95	integrase	integration and excision
UHGV-0155196_24	eggNOG-mapper	1160721.RBI_I01606	NA	NA
UHGV-0155196_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0155196_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0155196_25	KOfam	K01784	galE, GALE; UDP-glucose 4-epimerase [EC:5.1.3.2]	NA
UHGV-0155196_25	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-0155196_25	UniRef90	UniRef90_A0A2V2E2D4	UDP-glucose 4-epimerase	NA
UHGV-0155196_25	eggNOG-mapper	1392487.JIAD01000001_gene1338	UDP-glucose 4-epimerase	NA
UHGV-0155196_25	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0155196_25	NCBIFam	TIGR01179.1	UDP-glucose 4-epimerase GalE	NA
UHGV-0155196_25	COG	COG1087	UDP-glucose 4-epimerase	NA
UHGV-0155196_25	Structural annotation	PF16363, MF_00955, TIGR01181, COG1088	NA	NA
UHGV-0155196_26	UniRef90	UniRef90_A0A1Q6JKM6	ECF transporter S component	NA
UHGV-0155196_26	eggNOG-mapper	411467.BACCAP_01995	ECF transporter, substrate-specific component	NA
UHGV-0155196_26	Pfam	PF12822	ECF transporter, substrate-specific component	ECF_trnsprt
UHGV-0155196_26	COG	COG4684	NA	NA
UHGV-0155196_27	KOfam	K03525	coaX; type III pantothenate kinase [EC:2.7.1.33]	NA
UHGV-0155196_27	UniRef90	UniRef90_A0A1Q6JKT2	Type III pantothenate kinase	NA
UHGV-0155196_27	eggNOG-mapper	1384065.JAGS01000001_gene165	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis	NA
UHGV-0155196_27	Pfam	PF03309	Type III pantothenate kinase	Pan_kinase
UHGV-0155196_27	NCBIFam	TIGR00671.1	type III pantothenate kinase	NA
UHGV-0155196_27	COG	COG1521	Pantothenate kinase type III	NA
UHGV-0155196_27	HAMAP	MF_01274	Type III pantothenate kinase [coaX]	NA
UHGV-0155196_28	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0155196_28	PHROG	phrog_1493	endolysin	lysis
UHGV-0155196_28	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0155196_28	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0155196_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0155196_28	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0155196_28	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0155196_28	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0155196_29	PHROG	phrog_881	holin	lysis
UHGV-0155196_29	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0155196_29	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0155196_29	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0155196_29	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0155196_30	PHROG	phrog_4105	NA	unknown function
UHGV-0155196_30	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0155196_30	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0155196_31	eggNOG-mapper	1408437.JNJN01000002_gene1389	NA	NA
UHGV-0155196_31	Structural annotation	PF10651, TIGR02059	NA	NA
UHGV-0155196_32	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0155196_32	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0155196_32	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0155196_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0155196_32	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0155196_32	COG	COG4926	Phage-related protein	NA
UHGV-0155196_32	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0155196_33	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0155196_33	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0155196_33	eggNOG-mapper	585198.HMPREF0574_0620	phage tail	NA
UHGV-0155196_33	COG	COG4722	Phage-related protein YomH	NA
UHGV-0155196_33	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0155196_34	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0155196_34	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-0155196_34	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0155196_34	COG	COG5283	Phage-related tail protein	NA
UHGV-0155196_34	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0155196_37	PHROG	phrog_88	major tail protein	tail
UHGV-0155196_37	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0155196_37	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0155196_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0155196_37	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0155196_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0155196_38	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0155196_38	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0155196_38	Structural annotation	TIGR01725	NA	NA
UHGV-0155196_39	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0155196_39	Structural annotation	PF05657	NA	NA
UHGV-0155196_40	PHROG	phrog_19734	NA	unknown function
UHGV-0155196_40	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0155196_40	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0155196_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0155196_41	PHROG	phrog_749	NA	unknown function
UHGV-0155196_41	UniRef90	UniRef90_UPI001C0FB8A8	head-tail connector protein	NA
UHGV-0155196_41	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0155196_42	PHROG	phrog_10	major head protein	head and packaging
UHGV-0155196_42	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0155196_42	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0155196_42	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0155196_42	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0155196_42	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0155196_42	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0155196_42	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0155196_43	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0155196_43	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0155196_43	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0155196_43	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0155196_43	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0155196_43	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0155196_43	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0155196_44	PHROG	phrog_12	portal protein	head and packaging
UHGV-0155196_44	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-0155196_44	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0155196_44	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0155196_44	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0155196_44	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0155196_44	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0155196_45	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0155196_45	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-0155196_45	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0155196_45	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0155196_45	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0155196_45	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0155196_45	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0155196_46	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0155196_46	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0155196_46	eggNOG-mapper	1265845.PWEIH_00610	Phage terminase, small subunit	NA
UHGV-0155196_46	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0155196_46	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0155196_47	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0155196_47	PHROG	phrog_21498	NA	unknown function
UHGV-0155196_47	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-0155196_47	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0155196_47	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0155196_47	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0155196_47	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0155196_47	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0155196_48	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155196_48	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0155196_48	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0155196_48	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0155196_48	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0155196_49	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0155196_49	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0155196_49	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0155196_49	Structural annotation	PF14205	NA	NA
UHGV-0155196_50	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0155196_50	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0155196_50	Structural annotation	PF01446	NA	NA