UHGV-0155235

Genome information

Genome length 36,844 bps

CDS count 52

Completeness 98.67% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155235
vOTU ID	vOTU-010615
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_484818
BioSample	SAMN06110339
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.67% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.59
Jumbo phage	No

Genome content
Genome length	36,844 bps
GC content	43.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	95.35%
Average CDS length	678.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155235_1	UniRef90	UniRef90_A0A417WDP9	Plasmid recombination protein (Fragment)	NA
UHGV-0155235_1	eggNOG-mapper	1214166.ALLG01000010_gene1960	plasmid recombination enzyme	NA
UHGV-0155235_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0155235_2	UniRef90	UniRef90_A0A0V8QEL5	Succinate-semialdehyde dehydrogenase	NA
UHGV-0155235_2	eggNOG-mapper	1211819.CALK01000032_gene2932	NA	NA
UHGV-0155235_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0155235_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0155235_3	UniRef90	UniRef90_A0A1Y3WMT1	Resolvase	NA
UHGV-0155235_3	eggNOG-mapper	1235792.C808_03765	NA	NA
UHGV-0155235_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0155235_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0155235_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0155235_3	Pfam	PF14287	NA	DUF4368
UHGV-0155235_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0155235_3	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA
UHGV-0155235_5	Structural annotation	PF09202, MF_01819, NF008565, COG3432	NA	NA
UHGV-0155235_6	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0155235_6	Structural annotation	PF20063	NA	NA
UHGV-0155235_8	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155235_8	UniRef90	UniRef90_UPI000E75BB92	YqaJ viral recombinase family protein	NA
UHGV-0155235_8	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0155235_8	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0155235_8	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0155235_8	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0155235_8	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0155235_9	PHROG	phrog_674	NA	unknown function
UHGV-0155235_9	UniRef90	UniRef90_UPI00156D61E9	NA	NA
UHGV-0155235_9	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0155235_9	Pfam	PF07083	NA	DUF1351
UHGV-0155235_9	Structural annotation	PF07083	NA	NA
UHGV-0155235_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0155235_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0155235_12	UniRef90	UniRef90_A0A173W8R4	p33	NA
UHGV-0155235_12	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0155235_12	Pfam	PF03837	RecT family	RecT
UHGV-0155235_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0155235_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0155235_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0155235_13	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0155235_13	UniRef90	UniRef90_A0A3R6WN18	NA	NA
UHGV-0155235_13	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0155235_13	Pfam	PF06356	NA	DUF1064
UHGV-0155235_13	Structural annotation	PF06356	NA	NA
UHGV-0155235_14	PHROG	phrog_16304	NA	unknown function
UHGV-0155235_14	UniRef90	UniRef90_UPI000E7583BF	NA	NA
UHGV-0155235_14	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0155235_14	Pfam	PF19808	NA	DUF6291
UHGV-0155235_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0155235_14	Structural annotation	PF19808	NA	NA
UHGV-0155235_15	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0155235_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0155235_15	UniRef90	UniRef90_A0A173W8R8	Modification methylase MboII	NA
UHGV-0155235_15	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0155235_15	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0155235_15	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0155235_15	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0155235_15	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0155235_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0155235_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0155235_16	UniRef90	UniRef90_A0A3R6PIU8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0155235_16	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0155235_16	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0155235_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0155235_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0155235_16	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0155235_17	PHROG	phrog_3205	NA	unknown function
UHGV-0155235_17	UniRef90	UniRef90_E6EWD7	EF-hand domain-containing protein	NA
UHGV-0155235_17	eggNOG-mapper	1243664.CAVL020000054_gene3040	NA	NA
UHGV-0155235_18	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0155235_20	PHROG	phrog_9300	NA	unknown function
UHGV-0155235_21	PHROG	phrog_25456	NA	unknown function
UHGV-0155235_23	PHROG	phrog_20593	NA	unknown function
UHGV-0155235_24	PHROG	phrog_874	NA	unknown function
UHGV-0155235_24	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0155235_24	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0155235_25	PHROG	phrog_8684	NA	unknown function
UHGV-0155235_25	UniRef90	UniRef90_UPI000E7417AD	YopX family protein	NA
UHGV-0155235_25	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0155235_25	Pfam	PF09643	YopX protein	YopX
UHGV-0155235_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0155235_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0155235_27	PHROG	phrog_17690	NA	unknown function
UHGV-0155235_27	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0155235_27	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0155235_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0155235_28	UniRef90	UniRef90_A0A174WV03	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0155235_28	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0155235_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0155235_28	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0155235_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0155235_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0155235_29	UniRef90	UniRef90_A0A3A6J830	Terminase small subunit	NA
UHGV-0155235_29	eggNOG-mapper	445335.CBN_2993	Terminase small subunit	NA
UHGV-0155235_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0155235_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0155235_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0155235_30	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0155235_30	UniRef90	UniRef90_A0A3A6JKF1	Terminase	NA
UHGV-0155235_30	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-0155235_30	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0155235_30	COG	COG5410	NA	NA
UHGV-0155235_30	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0155235_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0155235_31	UniRef90	UniRef90_A0A3A6J7Z8	Phage portal protein	NA
UHGV-0155235_31	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0155235_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0155235_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0155235_32	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0155235_32	Structural annotation	PF10651	NA	NA
UHGV-0155235_34	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0155235_34	UniRef90	UniRef90_A0A822LMA1	Phage protein F-like protein	NA
UHGV-0155235_34	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0155235_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0155235_34	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0155235_34	COG	COG2369	NA	NA
UHGV-0155235_34	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0155235_35	eggNOG-mapper	476272.RUMHYD_02848	NA	NA
UHGV-0155235_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0155235_36	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-0155235_36	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-0155235_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0155235_36	Structural annotation	PF06810	NA	NA
UHGV-0155235_37	PHROG	phrog_212	major head protein	head and packaging
UHGV-0155235_37	UniRef90	UniRef90_A0A3A6J9J0	Phage capsid protein	NA
UHGV-0155235_37	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0155235_37	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0155235_39	PHROG	phrog_1236	head protein	head and packaging
UHGV-0155235_39	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0155235_39	Structural annotation	PF05135	NA	NA
UHGV-0155235_40	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0155235_40	UniRef90	UniRef90_A0A1C6E9J3	Bacteriophage head-tail adaptor	NA
UHGV-0155235_40	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0155235_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0155235_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0155235_41	UniRef90	UniRef90_A0A416I9Q2	HK97 gp10 family phage protein	NA
UHGV-0155235_41	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0155235_41	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0155235_42	PHROG	phrog_957	head protein	head and packaging
UHGV-0155235_42	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0155235_42	Structural annotation	PF12691	NA	NA
UHGV-0155235_43	PHROG	phrog_885	major tail protein	tail
UHGV-0155235_43	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0155235_43	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0155235_44	PHROG	phrog_1021	NA	unknown function
UHGV-0155235_44	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0155235_45	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-0155235_46	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0155235_46	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0155235_46	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0155235_46	Structural annotation	PF20155, MF_04138, COG3941	NA	NA
UHGV-0155235_47	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0155235_47	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0155235_47	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0155235_48	PHROG	phrog_538	minor tail protein	tail
UHGV-0155235_48	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0155235_48	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0155235_48	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0155235_48	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0155235_49	PHROG	phrog_9994	NA	unknown function
UHGV-0155235_49	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0155235_49	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0155235_49	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0155235_49	Structural annotation	NF012201	NA	NA
UHGV-0155235_50	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0155235_51	PHROG	phrog_199	holin	lysis
UHGV-0155235_51	UniRef90	UniRef90_A0A173W8Y4	Phage-related holin (Lysis protein)	NA
UHGV-0155235_51	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0155235_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0155235_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0155235_51	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0155235_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0155235_52	KOfam	K07273	acm; lysozyme	NA
UHGV-0155235_52	PHROG	phrog_291	endolysin	lysis
UHGV-0155235_52	UniRef90	UniRef90_A0A173W541	Lysozyme M1	NA
UHGV-0155235_52	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-0155235_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0155235_52	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0155235_52	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0155235_52	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA