UHGV-0155394

Genome information

vOTU vOTU-022091

Genome length 20,880 bps

CDS count 25

Completeness 50.97% (medium-quality)

geNomad score 0.9555

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155394
vOTU ID	vOTU-022091
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_471611
BioSample	SAMN06111938
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9555
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.36
Jumbo phage	No

Genome content
Genome length	20,880 bps
GC content	38.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	89.71%
Average CDS length	751.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155394_1	UniRef90	UniRef90_UPI001031040B	NA	NA
UHGV-0155394_1	eggNOG-mapper	1111454.HMPREF1250_1031	NA	NA
UHGV-0155394_1	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0155394_4	UniRef90	UniRef90_A0A2S0M9G3	XRE family transcriptional regulator	NA
UHGV-0155394_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155394_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0155394_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0155394_5	UniRef90	UniRef90_UPI001E50FC29	primase-like DNA-binding domain-containing protein	NA
UHGV-0155394_5	eggNOG-mapper	547228.M4ZRI7_9CAUD	DNA binding	NA
UHGV-0155394_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0155394_5	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0155394_5	Structural annotation	PF02498, PF13560, NF041951, COG3617, COG3655	NA	NA
UHGV-0155394_7	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0155394_7	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0155394_7	UniRef90	UniRef90_A0A1I2DVF7	Helicase conserved C-terminal domain-containing protein	NA
UHGV-0155394_7	eggNOG-mapper	1219626.HMPREF1639_07295	SNF2 family N-terminal domain	NA
UHGV-0155394_7	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0155394_7	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0155394_7	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0155394_7	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0155394_7	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0155394_8	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0155394_8	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0155394_8	UniRef90	UniRef90_A0A641X3K9	DNA polymerase elongation subunit (Family B)	NA
UHGV-0155394_8	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0155394_8	Pfam	PF04404	ERF superfamily	ERF
UHGV-0155394_8	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0155394_8	Structural annotation	PF04404, PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0155394_9	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155394_9	UniRef90	UniRef90_A0A7X2XHE3	YqaJ-like viral recombinase	NA
UHGV-0155394_9	eggNOG-mapper	1219626.HMPREF1639_07320	YqaJ viral recombinase family	NA
UHGV-0155394_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0155394_9	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0155394_9	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0155394_12	Structural annotation	PF05037, NF005674	NA	NA
UHGV-0155394_13	UniRef90	UniRef90_UPI001570F699	VRR-NUC domain-containing protein	NA
UHGV-0155394_13	eggNOG-mapper	1123288.SOV_6c01570	VRR_NUC	NA
UHGV-0155394_13	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0155394_13	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0155394_13	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0155394_14	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0155394_14	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0155394_14	UniRef90	UniRef90_A0A7X2XH92	SF3 helicase domain-containing protein	NA
UHGV-0155394_14	eggNOG-mapper	1219626.HMPREF1639_07360	D5 N terminal like	NA
UHGV-0155394_14	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0155394_14	Pfam	PF19263	NA	DUF5906
UHGV-0155394_14	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0155394_14	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0155394_14	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0155394_16	Structural annotation	PF18350, MF_00369, COG2139	NA	NA
UHGV-0155394_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0155394_18	UniRef90	UniRef90_A0A7X2XHC8	NA	NA
UHGV-0155394_18	eggNOG-mapper	994573.T472_0214010	sigma factor activity	NA
UHGV-0155394_18	Pfam	PF07374	NA	DUF1492
UHGV-0155394_18	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0155394_19	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0155394_19	UniRef90	UniRef90_UPI001E372E37	P27 family phage terminase small subunit	NA
UHGV-0155394_19	eggNOG-mapper	536233.CLO_1359	phage terminase small subunit	NA
UHGV-0155394_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0155394_19	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0155394_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0155394_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0155394_20	UniRef90	UniRef90_A0A641X3H8	Terminase	NA
UHGV-0155394_20	eggNOG-mapper	796940.HMPREF9628_00147	Phage Terminase	NA
UHGV-0155394_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0155394_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0155394_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0155394_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0155394_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0155394_21	UniRef90	UniRef90_A0A7X3BW08	Phage portal protein	NA
UHGV-0155394_21	eggNOG-mapper	742738.HMPREF9460_01364	Portal protein	NA
UHGV-0155394_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0155394_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0155394_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0155394_21	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0155394_22	KOfam	K06904	NA	NA
UHGV-0155394_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0155394_22	UniRef90	UniRef90_A0A7X3BWF5	HK97 family phage prohead protease	NA
UHGV-0155394_22	eggNOG-mapper	742738.HMPREF9460_01365	Phage prohead protease, HK97 family	NA
UHGV-0155394_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0155394_22	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0155394_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0155394_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0155394_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0155394_23	UniRef90	UniRef90_A0A7X3BWG7	Phage major capsid protein	NA
UHGV-0155394_23	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0155394_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0155394_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0155394_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0155394_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0155394_24	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0155394_24	PHROG	phrog_95	integrase	integration and excision
UHGV-0155394_24	UniRef90	UniRef90_A0A810PN33	Recombinase	NA
UHGV-0155394_24	eggNOG-mapper	1232453.BAIF02000016_gene3113	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0155394_24	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0155394_24	Pfam	PF07508	Recombinase	Recombinase
UHGV-0155394_24	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0155394_24	Pfam	PF14287	NA	DUF4368
UHGV-0155394_24	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0155394_24	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA
UHGV-0155394_25	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0155394_25	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0155394_25	UniRef90	UniRef90_A0A174INU9	DNA helicase	NA
UHGV-0155394_25	eggNOG-mapper	1414720.CBYM010000018_gene3020	DnaB-like helicase N terminal domain	NA
UHGV-0155394_25	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0155394_25	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0155394_25	COG	COG0305	Replicative DNA helicase	NA
UHGV-0155394_25	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA