UHGV-0155490

Genome information

Genome length 39,284 bps

CDS count 51

Completeness 79.69% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155490
vOTU ID	vOTU-018208
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_465124
BioSample	SAMN06112059
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.85
Jumbo phage	No

Genome content
Genome length	39,284 bps
GC content	49.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.77%
Average CDS length	701.47 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155490_1	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0155490_2	PHROG	phrog_18725	NA	unknown function
UHGV-0155490_2	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0155490_3	PHROG	phrog_13879	NA	unknown function
UHGV-0155490_3	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0155490_3	Structural annotation	PF14594, PF21114, MF_00813, NF033848, TIGR02961, COG4379, COG4266	NA	NA
UHGV-0155490_4	PHROG	phrog_1194	NA	unknown function
UHGV-0155490_4	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0155490_4	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0155490_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0155490_5	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0155490_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0155490_6	PHROG	phrog_706	NA	unknown function
UHGV-0155490_6	UniRef90	UniRef90_A0A0F0CE18	Bacteriophage Gp15 protein	NA
UHGV-0155490_6	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0155490_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0155490_6	Structural annotation	PF06854	NA	NA
UHGV-0155490_7	PHROG	phrog_11299	NA	unknown function
UHGV-0155490_7	eggNOG-mapper	411902.CLOBOL_00128	NA	NA
UHGV-0155490_8	PHROG	phrog_3099	NA	unknown function
UHGV-0155490_8	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0155490_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0155490_9	PHROG	phrog_3266	tail completion	connector
UHGV-0155490_9	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0155490_9	Structural annotation	PF20765	NA	NA
UHGV-0155490_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0155490_10	UniRef90	UniRef90_UPI00189CE0C6	minor capsid protein	NA
UHGV-0155490_10	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0155490_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0155490_10	Structural annotation	PF11114	NA	NA
UHGV-0155490_11	PHROG	phrog_3366	NA	unknown function
UHGV-0155490_11	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-0155490_11	Pfam	PF20536	NA	DUF6751
UHGV-0155490_11	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0155490_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0155490_12	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0155490_13	PHROG	phrog_247	major head protein	head and packaging
UHGV-0155490_13	UniRef90	UniRef90_D3ANA7	Putative coat protein	NA
UHGV-0155490_13	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0155490_13	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0155490_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0155490_14	UniRef90	UniRef90_A0A0F0CJ77	Phage minor structural protein GP20	NA
UHGV-0155490_14	eggNOG-mapper	1304866.K413DRAFT_3037	Phage minor structural protein GP20	NA
UHGV-0155490_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0155490_14	Structural annotation	PF06810	NA	NA
UHGV-0155490_15	PHROG	phrog_419	NA	unknown function
UHGV-0155490_15	UniRef90	UniRef90_A0A0A8WEQ1	Phage-related protein	NA
UHGV-0155490_15	eggNOG-mapper	797515.HMPREF9103_00825	NA	NA
UHGV-0155490_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0155490_16	UniRef90	UniRef90_A0A1C7GBR4	Minor capsid protein	NA
UHGV-0155490_16	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-0155490_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0155490_16	COG	COG2369	NA	NA
UHGV-0155490_16	Structural annotation	PF06152, PF04002	NA	NA
UHGV-0155490_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0155490_17	UniRef90	UniRef90_D3ANA2	Putative phage minor capsid protein	NA
UHGV-0155490_17	eggNOG-mapper	411461.DORFOR_01163	NA	NA
UHGV-0155490_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0155490_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0155490_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0155490_18	UniRef90	UniRef90_UPI001D2E2D83	PBSX family phage terminase large subunit	NA
UHGV-0155490_18	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0155490_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0155490_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0155490_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0155490_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0155490_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0155490_19	PHROG	phrog_1558	NA	unknown function
UHGV-0155490_19	UniRef90	UniRef90_UPI001D077CB1	helix-turn-helix domain-containing protein	NA
UHGV-0155490_19	eggNOG-mapper	1163671.JAGI01000002_gene3057	NA	NA
UHGV-0155490_19	Structural annotation	PF13613, MF_00245, NF008895, COG2739	NA	NA
UHGV-0155490_21	Structural annotation	COG4446	NA	NA
UHGV-0155490_26	PHROG	phrog_8684	NA	unknown function
UHGV-0155490_26	UniRef90	UniRef90_R0AZY4	YopX domain-containing protein	NA
UHGV-0155490_26	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0155490_26	Pfam	PF09643	YopX protein	YopX
UHGV-0155490_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0155490_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0155490_27	PHROG	phrog_774	NA	unknown function
UHGV-0155490_27	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0155490_29	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0155490_29	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0155490_29	UniRef90	UniRef90_R0BUU1	Helicase ATP-binding domain-containing protein	NA
UHGV-0155490_29	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0155490_29	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0155490_29	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0155490_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0155490_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0155490_29	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0155490_30	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155490_30	UniRef90	UniRef90_R0CM51	VRR-NUC domain-containing protein	NA
UHGV-0155490_30	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-0155490_30	Structural annotation	PF01870, MF_01490, NF002585, COG1591	NA	NA
UHGV-0155490_31	Structural annotation	PF01316, MF_00173, NF003281, COG1438	NA	NA
UHGV-0155490_32	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0155490_32	UniRef90	UniRef90_A0A3E2VRI7	Virulence-associated protein E	NA
UHGV-0155490_32	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-0155490_32	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0155490_32	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0155490_32	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0155490_33	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0155490_33	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0155490_33	UniRef90	UniRef90_R0D3D5	POLAc domain-containing protein	NA
UHGV-0155490_33	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-0155490_33	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0155490_33	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0155490_33	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0155490_34	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0155490_34	UniRef90	UniRef90_A0A3E2VQQ5	NA	NA
UHGV-0155490_34	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-0155490_34	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0155490_37	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0155490_37	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155490_37	UniRef90	UniRef90_A0A7X2NL07	NA	NA
UHGV-0155490_37	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-0155490_37	PADLOC	DruK_00002	PD-(D/E)XK nuclease superfamily	Druantia
UHGV-0155490_37	Pfam	PF10926	NA	DUF2800
UHGV-0155490_37	COG	COG2887	RecB family exonuclease	NA
UHGV-0155490_37	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0155490_38	PHROG	phrog_22695	NA	unknown function
UHGV-0155490_38	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-0155490_39	PHROG	phrog_37022	NA	unknown function
UHGV-0155490_39	UniRef90	UniRef90_A0A174PPI7	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0155490_39	eggNOG-mapper	1226322.HMPREF1545_03512	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0155490_39	Structural annotation	PF01329, MF_00434, NF006158	NA	NA
UHGV-0155490_41	PHROG	phrog_34638	NA	unknown function
UHGV-0155490_43	PHROG	phrog_989	NA	unknown function
UHGV-0155490_43	UniRef90	UniRef90_A0A1C7GA09	LysR family transcriptional regulator	NA
UHGV-0155490_43	eggNOG-mapper	478749.BRYFOR_06553	NA	NA
UHGV-0155490_43	Structural annotation	PF11372	NA	NA
UHGV-0155490_44	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0155490_44	UniRef90	UniRef90_R0D516	Bro-N domain-containing protein	NA
UHGV-0155490_44	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0155490_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0155490_45	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0155490_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0155490_45	UniRef90	UniRef90_R0BIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0155490_45	eggNOG-mapper	97139.C824_00060	Peptidase S24-like	NA
UHGV-0155490_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155490_45	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0155490_45	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0155490_45	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, NF007257, COG2932, COG1396	NA	NA
UHGV-0155490_46	UniRef90	UniRef90_R0D377	SmpA_OmlA domain-containing protein	NA
UHGV-0155490_46	COG	COG5279	Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain	NA
UHGV-0155490_47	eggNOG-mapper	411461.DORFOR_00034	NA	NA
UHGV-0155490_47	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0155490_48	KOfam	K14059	int; integrase	NA
UHGV-0155490_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0155490_48	UniRef90	UniRef90_A0A7X2NJU5	Site-specific integrase	NA
UHGV-0155490_48	eggNOG-mapper	97139.C824_03191	Belongs to the 'phage' integrase family	NA
UHGV-0155490_48	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0155490_48	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0155490_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0155490_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0155490_48	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0155490_49	PHROG	phrog_8268	spore protease	other
UHGV-0155490_49	UniRef90	UniRef90_A0A858NB37	Spore protease YyaC	NA
UHGV-0155490_49	eggNOG-mapper	411902.CLOBOL_02572	NA	NA
UHGV-0155490_49	Pfam	PF06866	NA	DUF1256
UHGV-0155490_49	NCBIFam	TIGR02841.1	spore protease YyaC	NA
UHGV-0155490_49	Structural annotation	PF06866, MF_00083, TIGR02841, COG0680	NA	NA
UHGV-0155490_50	UniRef90	UniRef90_A8RPV8	NTP_transferase domain-containing protein	NA
UHGV-0155490_50	eggNOG-mapper	411902.CLOBOL_02574	Nucleotidyl transferase	NA
UHGV-0155490_50	Pfam	PF00483	Nucleotidyl transferase	NTP_transferase
UHGV-0155490_50	COG	COG1209	dTDP-glucose pyrophosphorylase	NA
UHGV-0155490_50	Structural annotation	PF00483, MF_01631, NF041313, COG1209	NA	NA