UHGV-0155553

Genome information

Genome length 40,955 bps

CDS count 64

Completeness 74.03% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155553
vOTU ID	vOTU-027695
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_454736
BioSample	SAMN05971420
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.27
Jumbo phage	No

Genome content
Genome length	40,955 bps
GC content	43.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.58%
Average CDS length	588.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155553_1	PHROG	phrog_6058	NA	unknown function
UHGV-0155553_1	UniRef90	UniRef90_A0A0V8QBN7	Histone-lysine N-methyltransferase	NA
UHGV-0155553_1	eggNOG-mapper	658088.HMPREF0987_00666	NA	NA
UHGV-0155553_3	PHROG	phrog_19490	NA	unknown function
UHGV-0155553_3	UniRef90	UniRef90_A0A373PRN0	Glutathione peroxidase	NA
UHGV-0155553_4	UniRef90	UniRef90_UPI001BA4F03E	YopX family protein	NA
UHGV-0155553_6	PHROG	phrog_2776	NA	unknown function
UHGV-0155553_6	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0155553_6	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0155553_7	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0155553_7	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0155553_7	UniRef90	UniRef90_A0A1C5KLT1	Probable chromosome-partitioning protein parB	NA
UHGV-0155553_7	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0155553_7	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0155553_7	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0155553_7	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0155553_7	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0155553_10	PHROG	phrog_33611	NA	unknown function
UHGV-0155553_10	eggNOG-mapper	1226322.HMPREF1545_03511	NA	NA
UHGV-0155553_10	Structural annotation	PF07215	NA	NA
UHGV-0155553_11	eggNOG-mapper	515622.bpr_IV139	NA	NA
UHGV-0155553_13	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0155553_13	UniRef90	UniRef90_A0A1C6H291	Antirestriction protein	NA
UHGV-0155553_13	eggNOG-mapper	445972.ANACOL_01830	NA	NA
UHGV-0155553_13	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0155553_14	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0155553_14	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0155553_14	UniRef90	UniRef90_A0A416VJW9	Helix-turn-helix domain-containing protein	NA
UHGV-0155553_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155553_16	PHROG	phrog_24588	NA	unknown function
UHGV-0155553_16	UniRef90	UniRef90_UPI001D061918	zinc ribbon domain-containing protein	NA
UHGV-0155553_16	eggNOG-mapper	40215.BBOS01000048_gene3344	NA	NA
UHGV-0155553_18	PHROG	phrog_7566	NA	unknown function
UHGV-0155553_18	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0155553_18	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0155553_19	PHROG	phrog_2355	NA	unknown function
UHGV-0155553_19	UniRef90	UniRef90_UPI0014124EFA	aminopeptidase N	NA
UHGV-0155553_19	eggNOG-mapper	1507.HMPREF0262_00831	NA	NA
UHGV-0155553_20	UniRef90	UniRef90_A0A6L6P533	Thrombopoietin receptor	NA
UHGV-0155553_20	eggNOG-mapper	1123288.SOV_1c03770	NA	NA
UHGV-0155553_23	PHROG	phrog_35453	NA	unknown function
UHGV-0155553_29	PHROG	phrog_3754	NA	unknown function
UHGV-0155553_29	eggNOG-mapper	1278311.AUAL01000001_gene36	NA	NA
UHGV-0155553_31	PHROG	phrog_918	NA	unknown function
UHGV-0155553_31	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0155553_31	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0155553_31	Pfam	PF19791	NA	DUF6275
UHGV-0155553_31	Structural annotation	PF19791	NA	NA
UHGV-0155553_32	PHROG	phrog_14030	NA	unknown function
UHGV-0155553_32	UniRef90	UniRef90_C6JAY8	NlpC/P60 domain-containing protein	NA
UHGV-0155553_32	eggNOG-mapper	411459.RUMOBE_01085	NA	NA
UHGV-0155553_32	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0155553_32	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0155553_32	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0155553_32	Structural annotation	PF08230	NA	NA
UHGV-0155553_33	PHROG	phrog_34925	NA	unknown function
UHGV-0155553_33	UniRef90	UniRef90_A0A6L5T8S5	Aminopeptidase	NA
UHGV-0155553_33	eggNOG-mapper	457412.RSAG_01106	NA	NA
UHGV-0155553_33	Structural annotation	PF06946	NA	NA
UHGV-0155553_34	PHROG	phrog_38777	NA	unknown function
UHGV-0155553_34	eggNOG-mapper	457412.RSAG_01108	NA	NA
UHGV-0155553_35	PHROG	phrog_4105	NA	unknown function
UHGV-0155553_35	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0155553_37	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-0155553_39	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0155553_39	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0155553_39	UniRef90	UniRef90_A0A1C5PK20	Retron-type reverse transcriptase	NA
UHGV-0155553_39	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0155553_39	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0155553_39	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0155553_39	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0155553_39	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0155553_40	eggNOG-mapper	1203606.HMPREF1526_01922	NA	NA
UHGV-0155553_40	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-0155553_41	PHROG	phrog_19280	NA	unknown function
UHGV-0155553_41	UniRef90	UniRef90_A0A413UF00	NA	NA
UHGV-0155553_41	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0155553_41	Pfam	PF19789	NA	DUF6273
UHGV-0155553_41	Structural annotation	PF19789	NA	NA
UHGV-0155553_42	PHROG	phrog_17134	NA	unknown function
UHGV-0155553_44	PHROG	phrog_9886	NA	unknown function
UHGV-0155553_44	UniRef90	UniRef90_A0A1C5UDJ9	Phage minor structural protein, N-terminal region	NA
UHGV-0155553_44	eggNOG-mapper	1111121.HMPREF1247_1242	Prophage endopeptidase tail	NA
UHGV-0155553_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0155553_44	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0155553_44	COG	COG4926	Phage-related protein	NA
UHGV-0155553_44	Structural annotation	PF06605, PF04862, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-0155553_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0155553_45	UniRef90	UniRef90_A0A1C5UDN1	Phage-related protein	NA
UHGV-0155553_45	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0155553_45	COG	COG4722	Phage-related protein YomH	NA
UHGV-0155553_45	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0155553_46	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0155553_46	UniRef90	UniRef90_A0A1C5UCW2	Phage-related protein	NA
UHGV-0155553_46	eggNOG-mapper	411461.DORFOR_01175	phage tail tape measure protein	NA
UHGV-0155553_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0155553_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0155553_46	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0155553_46	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0155553_47	PHROG	phrog_706	NA	unknown function
UHGV-0155553_47	UniRef90	UniRef90_A0A1C5UCZ9	Bacteriophage Gp15 protein	NA
UHGV-0155553_47	eggNOG-mapper	931276.Cspa_c07530	Bacteriophage Gp15 protein	NA
UHGV-0155553_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0155553_47	Structural annotation	PF06854	NA	NA
UHGV-0155553_48	PHROG	phrog_4450	NA	unknown function
UHGV-0155553_48	UniRef90	UniRef90_UPI0018986D97	AP endonuclease	NA
UHGV-0155553_48	eggNOG-mapper	536233.CLO_1573	NA	NA
UHGV-0155553_48	Pfam	PF20378	NA	DUF6673
UHGV-0155553_48	Structural annotation	PF20378	NA	NA
UHGV-0155553_49	PHROG	phrog_3099	NA	unknown function
UHGV-0155553_49	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0155553_49	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0155553_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0155553_50	PHROG	phrog_3266	tail completion	connector
UHGV-0155553_50	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0155553_50	eggNOG-mapper	1321782.HMPREF1986_02272	NA	NA
UHGV-0155553_50	Structural annotation	PF12691	NA	NA
UHGV-0155553_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0155553_51	UniRef90	UniRef90_UPI001D074B8B	minor capsid protein	NA
UHGV-0155553_51	eggNOG-mapper	1321782.HMPREF1986_02271	NA	NA
UHGV-0155553_51	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0155553_51	Structural annotation	PF11114	NA	NA
UHGV-0155553_52	PHROG	phrog_3366	NA	unknown function
UHGV-0155553_52	Pfam	PF20536	NA	DUF6751
UHGV-0155553_52	Structural annotation	PF20536	NA	NA
UHGV-0155553_53	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0155553_53	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-0155553_55	PHROG	phrog_1378	NA	unknown function
UHGV-0155553_56	PHROG	phrog_422	major head protein	head and packaging
UHGV-0155553_56	UniRef90	UniRef90_UPI0018A95C52	capsid protein	NA
UHGV-0155553_56	eggNOG-mapper	545697.HMPREF0216_02849	NA	NA
UHGV-0155553_56	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0155553_57	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0155553_57	UniRef90	UniRef90_A0A1C5UDW0	Phage minor structural protein GP20	NA
UHGV-0155553_57	eggNOG-mapper	665956.HMPREF1032_03067	Phage minor structural protein GP20	NA
UHGV-0155553_57	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0155553_58	PHROG	phrog_13199	NA	unknown function
UHGV-0155553_58	Structural annotation	PF14083	NA	NA
UHGV-0155553_59	PHROG	phrog_1048	NA	unknown function
UHGV-0155553_59	UniRef90	UniRef90_UPI00189A7662	NA	NA
UHGV-0155553_59	eggNOG-mapper	411462.DORLON_00765	NA	NA
UHGV-0155553_59	Pfam	PF11195	NA	DUF2829
UHGV-0155553_59	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0155553_59	Structural annotation	PF11195	NA	NA
UHGV-0155553_60	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0155553_60	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0155553_60	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0155553_60	Pfam	PF14359	NA	DUF4406
UHGV-0155553_60	Structural annotation	PF14359	NA	NA
UHGV-0155553_61	PHROG	phrog_419	NA	unknown function
UHGV-0155553_61	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0155553_61	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0155553_61	Structural annotation	PF14083	NA	NA
UHGV-0155553_62	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0155553_62	UniRef90	UniRef90_A0A4R3JHR3	Minor capsid protein 2	NA
UHGV-0155553_62	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0155553_62	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0155553_62	COG	COG2369	NA	NA
UHGV-0155553_62	Structural annotation	PF06152	NA	NA
UHGV-0155553_63	PHROG	phrog_533	portal protein	head and packaging
UHGV-0155553_63	UniRef90	UniRef90_A0A1C5UE68	Phage portal protein, putative, A118 family	NA
UHGV-0155553_63	eggNOG-mapper	665956.HMPREF1032_03069	NA	NA
UHGV-0155553_63	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0155553_63	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0155553_64	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0155553_64	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0155553_64	UniRef90	UniRef90_A0A395V112	PBSX family phage terminase large subunit	NA
UHGV-0155553_64	eggNOG-mapper	1292035.H476_1019	Phage terminase large subunit	NA
UHGV-0155553_64	COG	COG1783	Phage terminase large subunit	NA
UHGV-0155553_64	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA