UHGV-0155595

Genome information

Genome length 33,776 bps

CDS count 48

Completeness 95.55% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155595
vOTU ID	vOTU-067680
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_499165
BioSample	SAMN06110401
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.55% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.8
Jumbo phage	No

Genome content
Genome length	33,776 bps
GC content	52.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.93%
Average CDS length	649.63 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155595_2	Structural annotation	PF20647	NA	NA
UHGV-0155595_3	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0155595_3	PHROG	phrog_894	endolysin	lysis
UHGV-0155595_3	UniRef90	UniRef90_A0A3D3YIT1	Peptidase M15	NA
UHGV-0155595_3	eggNOG-mapper	449673.BACSTE_00851	Peptidase M15	NA
UHGV-0155595_3	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0155595_3	COG	COG3108	NA	NA
UHGV-0155595_3	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0155595_5	PHROG	phrog_38864	NA	unknown function
UHGV-0155595_5	Structural annotation	PF13185, MF_04104, NF041673, COG2203	NA	NA
UHGV-0155595_7	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0155595_7	Structural annotation	PF13385, COG3506	NA	NA
UHGV-0155595_9	PHROG	phrog_21217	NA	unknown function
UHGV-0155595_9	eggNOG-mapper	742767.HMPREF9456_03364	NA	NA
UHGV-0155595_10	PHROG	phrog_37298	NA	unknown function
UHGV-0155595_10	UniRef90	UniRef90_A0A0P0M3D9	Erythrocyte binding protein 1	NA
UHGV-0155595_10	eggNOG-mapper	1235803.C825_02656	NA	NA
UHGV-0155595_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0155595_11	eggNOG-mapper	742767.HMPREF9456_03308	NA	NA
UHGV-0155595_12	PHROG	phrog_33698	NA	unknown function
UHGV-0155595_12	UniRef90	UniRef90_UPI001873A18B	BACON domain-containing protein	NA
UHGV-0155595_12	eggNOG-mapper	742767.HMPREF9456_03372	NA	NA
UHGV-0155595_12	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0155595_13	Structural annotation	PF19266, TIGR02126, COG5437	NA	NA
UHGV-0155595_17	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-0155595_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0155595_19	UniRef90	UniRef90_A0A4Y1WQ08	Nucleoid-structuring protein H-NS	NA
UHGV-0155595_19	eggNOG-mapper	449673.BACSTE_00580	Phage capsid family	NA
UHGV-0155595_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0155595_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0155595_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0155595_19	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0155595_20	KOfam	K06904	NA	NA
UHGV-0155595_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0155595_20	UniRef90	UniRef90_UPI000B385EC9	HK97 family phage prohead protease	NA
UHGV-0155595_20	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-0155595_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0155595_20	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0155595_20	COG	COG3740	Phage head maturation protease	NA
UHGV-0155595_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0155595_21	eggNOG-mapper	435590.BVU_2835	Phage portal protein	NA
UHGV-0155595_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0155595_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0155595_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0155595_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0155595_22	UniRef90	UniRef90_A0A497PCX3	Terminase	NA
UHGV-0155595_22	eggNOG-mapper	313596.RB2501_01375	Phage terminase large subunit	NA
UHGV-0155595_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0155595_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0155595_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0155595_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0155595_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0155595_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0155595_23	UniRef90	UniRef90_A0A316NYX6	Terminase small subunit	NA
UHGV-0155595_23	eggNOG-mapper	742725.HMPREF9450_02101	COG NOG24226 non supervised orthologous group	NA
UHGV-0155595_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0155595_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0155595_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0155595_24	Structural annotation	PF09035, NF040990	NA	NA
UHGV-0155595_26	Structural annotation	NF011227	NA	NA
UHGV-0155595_27	PHROG	phrog_8684	NA	unknown function
UHGV-0155595_27	UniRef90	UniRef90_UPI0018987415	YopX family protein	NA
UHGV-0155595_27	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-0155595_27	Pfam	PF09643	YopX protein	YopX
UHGV-0155595_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0155595_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0155595_28	PHROG	phrog_874	NA	unknown function
UHGV-0155595_28	eggNOG-mapper	1236504.HMPREF2132_11385	NA	NA
UHGV-0155595_28	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0155595_29	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0155595_29	UniRef90	UniRef90_UPI0018749974	radical SAM protein	NA
UHGV-0155595_29	eggNOG-mapper	445970.ALIPUT_01609	radical SAM domain protein	NA
UHGV-0155595_29	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0155595_29	Structural annotation	PF04055, MF_01865, TIGR04013, COG0320	NA	NA
UHGV-0155595_30	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0155595_30	UniRef90	UniRef90_A0A658JVV7	Radical SAM protein (Fragment)	NA
UHGV-0155595_30	eggNOG-mapper	1203611.KB894549_gene2264	radical SAM domain protein	NA
UHGV-0155595_30	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0155595_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0155595_31	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0155595_31	UniRef90	UniRef90_B0MWV7	Cytosine-specific methyltransferase	NA
UHGV-0155595_31	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0155595_31	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0155595_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0155595_31	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0155595_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0155595_31	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0155595_32	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0155595_32	PHROG	phrog_31265	NA	unknown function
UHGV-0155595_32	UniRef90	UniRef90_UPI001898731D	pentapeptide repeat-containing protein	NA
UHGV-0155595_32	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0155595_32	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0155595_32	Pfam	PF19062	NA	DUF5758
UHGV-0155595_32	COG	COG1357	NA	NA
UHGV-0155595_32	Structural annotation	PF19062, PF13599, NF000420	NA	NA
UHGV-0155595_33	PHROG	phrog_824	NA	unknown function
UHGV-0155595_33	UniRef90	UniRef90_A0A143XP07	VRR-NUC domain protein	NA
UHGV-0155595_33	eggNOG-mapper	445970.ALIPUT_00026	NA	NA
UHGV-0155595_33	Structural annotation	PF08774	NA	NA
UHGV-0155595_34	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0155595_34	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0155595_34	UniRef90	UniRef90_A0A396MBI3	Toprim domain-containing protein	NA
UHGV-0155595_34	eggNOG-mapper	742725.HMPREF9450_00879	NA	NA
UHGV-0155595_34	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0155595_34	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0155595_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-0155595_34	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0155595_35	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0155595_35	UniRef90	UniRef90_A0A2J0MMY6	Phg_2220_C domain-containing protein	NA
UHGV-0155595_35	eggNOG-mapper	1123058.KB894259_gene376	NA	NA
UHGV-0155595_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0155595_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0155595_36	eggNOG-mapper	1127696.HMPREF9134_00465	NA	NA
UHGV-0155595_36	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0155595_37	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0155595_39	UniRef90	UniRef90_UPI0018977E4B	Rad52/Rad22 family DNA repair protein	NA
UHGV-0155595_39	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0155595_39	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0155595_42	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0155595_42	UniRef90	UniRef90_UPI0002F68456	KilA-N domain-containing protein	NA
UHGV-0155595_42	eggNOG-mapper	1121100.JCM6294_529	KilA-N domain	NA
UHGV-0155595_42	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0155595_42	Structural annotation	PF04383, NF033622	NA	NA
UHGV-0155595_45	eggNOG-mapper	1168289.AJKI01000002_gene2670	NA	NA
UHGV-0155595_45	Structural annotation	PF16429, NF007320, COG3692	NA	NA
UHGV-0155595_46	PHROG	phrog_1281	NA	unknown function
UHGV-0155595_46	UniRef90	UniRef90_A0A143XM92	NA	NA
UHGV-0155595_46	eggNOG-mapper	324925.Ppha_1224	Phage-associated protein	NA
UHGV-0155595_46	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0155595_46	COG	COG3600	NA	NA
UHGV-0155595_46	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0155595_48	Structural annotation	PF11112	NA	NA