UHGV-0155708

Genome information

Genome length 34,977 bps

CDS count 52

Completeness 94.48% (high-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155708
vOTU ID	vOTU-070559
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_457863
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.48% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.66
Jumbo phage	No

Genome content
Genome length	34,977 bps
GC content	43.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.36%
Average CDS length	632.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155708_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0155708_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0155708_1	UniRef90	UniRef90_A0A374E9M4	Recombinase family protein	NA
UHGV-0155708_1	eggNOG-mapper	97139.C824_00068	Recombinase	NA
UHGV-0155708_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0155708_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0155708_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0155708_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0155708_2	PHROG	phrog_10934	NA	unknown function
UHGV-0155708_2	eggNOG-mapper	742722.HMPREF9463_00385	NA	NA
UHGV-0155708_3	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0155708_3	PHROG	phrog_7872	NA	unknown function
UHGV-0155708_3	UniRef90	UniRef90_D4M567	Ion channel	NA
UHGV-0155708_3	eggNOG-mapper	411459.RUMOBE_00964	Ion channel	NA
UHGV-0155708_3	Pfam	PF07885	Ion channel	Ion_trans_2
UHGV-0155708_3	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-0155708_3	Structural annotation	PF07885, NF040645	NA	NA
UHGV-0155708_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0155708_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0155708_5	UniRef90	UniRef90_D4M569	Helix-turn-helix	NA
UHGV-0155708_5	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0155708_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155708_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0155708_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0155708_9	Structural annotation	PF20037, COG3212	NA	NA
UHGV-0155708_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0155708_13	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0155708_13	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0155708_14	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0155708_14	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0155708_14	UniRef90	UniRef90_A0A844KCI1	Ribonuclease HI	NA
UHGV-0155708_14	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0155708_14	Pfam	PF00075	RNase H	RNase_H
UHGV-0155708_14	COG	COG0328	Ribonuclease HI	NA
UHGV-0155708_14	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0155708_15	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0155708_16	PHROG	phrog_4433	NA	unknown function
UHGV-0155708_16	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0155708_17	PHROG	phrog_8470	NA	unknown function
UHGV-0155708_17	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0155708_17	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0155708_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0155708_17	Structural annotation	PF14284	NA	NA
UHGV-0155708_18	PHROG	phrog_15077	NA	unknown function
UHGV-0155708_18	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0155708_18	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0155708_18	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0155708_19	PHROG	phrog_7566	NA	unknown function
UHGV-0155708_19	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0155708_26	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0155708_26	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0155708_26	UniRef90	UniRef90_D4MVN1	Type I restriction-modification system methyltransferase subunit	NA
UHGV-0155708_26	eggNOG-mapper	706434.HMPREF9429_00533	Type I restriction-modification system, M subunit	NA
UHGV-0155708_26	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0155708_26	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0155708_26	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0155708_26	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0155708_27	UniRef90	UniRef90_W1Q2J1	Methylase_S domain-containing protein	NA
UHGV-0155708_27	eggNOG-mapper	592010.GCWU000182_001449	Type I restriction modification DNA specificity domain	NA
UHGV-0155708_27	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0155708_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0155708_28	UniRef90	UniRef90_UPI001899709D	NA	NA
UHGV-0155708_28	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0155708_28	Pfam	PF07374	NA	DUF1492
UHGV-0155708_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0155708_28	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0155708_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0155708_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155708_29	UniRef90	UniRef90_A0A1Q6K9L9	HNHc domain-containing protein	NA
UHGV-0155708_29	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0155708_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0155708_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0155708_30	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0155708_30	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0155708_30	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-0155708_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0155708_30	COG	COG5484	NA	NA
UHGV-0155708_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0155708_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0155708_31	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0155708_31	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0155708_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0155708_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0155708_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0155708_31	Structural annotation	PF03354, PF20441, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0155708_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0155708_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0155708_32	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0155708_32	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0155708_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0155708_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0155708_32	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0155708_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0155708_33	UniRef90	UniRef90_A0A844KDK0	Phage major capsid protein	NA
UHGV-0155708_33	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0155708_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0155708_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0155708_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0155708_33	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0155708_35	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-0155708_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0155708_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0155708_36	Structural annotation	PF05657	NA	NA
UHGV-0155708_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0155708_37	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0155708_37	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0155708_38	PHROG	phrog_88	major tail protein	tail
UHGV-0155708_38	UniRef90	UniRef90_UPI0006C1EB28	phage tail protein	NA
UHGV-0155708_38	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-0155708_38	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0155708_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0155708_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0155708_41	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0155708_41	UniRef90	UniRef90_UPI0006C3C180	phage tail tape measure protein	NA
UHGV-0155708_41	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0155708_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0155708_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0155708_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0155708_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0155708_42	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-0155708_42	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0155708_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0155708_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0155708_43	PHROG	phrog_13289	tail protein	tail
UHGV-0155708_43	UniRef90	UniRef90_A0A844KBR1	Prophage_tail domain-containing protein	NA
UHGV-0155708_43	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0155708_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0155708_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0155708_43	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0155708_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0155708_44	PHROG	phrog_14030	NA	unknown function
UHGV-0155708_44	UniRef90	UniRef90_A0A844KDJ1	Peptidase M23	NA
UHGV-0155708_44	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0155708_44	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0155708_44	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0155708_44	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0155708_44	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0155708_45	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0155708_45	UniRef90	UniRef90_A0A374E9Q0	Collagen-like protein	NA
UHGV-0155708_45	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0155708_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0155708_45	Structural annotation	PF10651, NF007636, COG5456	NA	NA
UHGV-0155708_46	PHROG	phrog_16164	NA	unknown function
UHGV-0155708_46	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0155708_46	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0155708_47	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0155708_47	PHROG	phrog_819	tail protein	tail
UHGV-0155708_47	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-0155708_47	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0155708_48	UniRef90	UniRef90_UPI001C0C21D5	acyl carrier protein	NA
UHGV-0155708_48	eggNOG-mapper	1235799.C818_04237	NA	NA
UHGV-0155708_48	Structural annotation	PF14301	NA	NA
UHGV-0155708_49	PHROG	phrog_20274	NA	unknown function
UHGV-0155708_49	UniRef90	UniRef90_A0A173TUK0	Predicted membrane protein	NA
UHGV-0155708_49	eggNOG-mapper	1235799.C818_04238	Putative ABC-transporter type IV	NA
UHGV-0155708_49	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0155708_49	COG	COG4905	NA	NA
UHGV-0155708_49	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0155708_50	PHROG	phrog_37799	NA	unknown function
UHGV-0155708_50	UniRef90	UniRef90_A0A373N7C7	Protein utxA	NA
UHGV-0155708_50	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0155708_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0155708_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0155708_50	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0155708_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0155708_51	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0155708_52	KOfam	K07273	acm; lysozyme	NA
UHGV-0155708_52	PHROG	phrog_291	endolysin	lysis
UHGV-0155708_52	UniRef90	UniRef90_D4M5A7	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0155708_52	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0155708_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0155708_52	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0155708_52	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA