UHGV-0155796

Genome information

Genome length 41,089 bps

CDS count 69

Completeness 96.69% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155796
vOTU ID	vOTU-062496
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_476727
BioSample	SAMN06115398
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.72
Jumbo phage	No

Genome content
Genome length	41,089 bps
GC content	54.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	93.02%
Average CDS length	557.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155796_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0155796_2	UniRef90	UniRef90_N9Z4Q7	HTH cro/C1-type domain-containing protein	NA
UHGV-0155796_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155796_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0155796_6	PHROG	phrog_674	NA	unknown function
UHGV-0155796_6	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0155796_6	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-0155796_6	Pfam	PF07083	NA	DUF1351
UHGV-0155796_6	Structural annotation	PF07083	NA	NA
UHGV-0155796_7	PHROG	phrog_3657	NA	unknown function
UHGV-0155796_7	UniRef90	UniRef90_UPI001DC4E782	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0155796_7	eggNOG-mapper	411461.DORFOR_00020	NA	NA
UHGV-0155796_8	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0155796_8	UniRef90	UniRef90_G9YN42	Metallo-beta-lactamase domain protein	NA
UHGV-0155796_8	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0155796_8	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0155796_8	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0155796_8	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0155796_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0155796_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0155796_9	UniRef90	UniRef90_G4L1H2	Single-stranded DNA-binding protein	NA
UHGV-0155796_9	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0155796_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0155796_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0155796_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0155796_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0155796_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0155796_10	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0155796_10	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0155796_10	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0155796_10	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0155796_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0155796_10	Structural annotation	PF14297	NA	NA
UHGV-0155796_11	PHROG	phrog_9804	NA	unknown function
UHGV-0155796_11	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0155796_11	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0155796_11	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0155796_11	Structural annotation	PF11417	NA	NA
UHGV-0155796_14	eggNOG-mapper	1121344.JHZO01000005_gene51	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0155796_14	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0155796_14	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0155796_15	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0155796_15	UniRef90	UniRef90_UPI001C0170D2	NA	NA
UHGV-0155796_15	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0155796_15	Pfam	PF06356	NA	DUF1064
UHGV-0155796_15	Structural annotation	PF06356	NA	NA
UHGV-0155796_17	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0155796_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0155796_17	UniRef90	UniRef90_UPI00115BCC30	helix-turn-helix domain-containing protein	NA
UHGV-0155796_17	eggNOG-mapper	460265.Mnod_5702	Helix-turn-helix XRE-family like proteins	NA
UHGV-0155796_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155796_17	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0155796_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0155796_17	Structural annotation	PF01381, PF13744, NF041951, COG3655, COG2944	NA	NA
UHGV-0155796_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155796_18	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0155796_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0155796_19	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0155796_19	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0155796_19	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0155796_19	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0155796_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0155796_19	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0155796_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0155796_22	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0155796_22	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0155796_23	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0155796_24	PHROG	phrog_38832	NA	unknown function
UHGV-0155796_24	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0155796_25	UniRef90	UniRef90_A0A3D9XTF5	Lar family restriction alleviation protein	NA
UHGV-0155796_27	PHROG	phrog_22543	NA	unknown function
UHGV-0155796_27	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0155796_28	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0155796_30	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0155796_30	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0155796_30	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0155796_31	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0155796_31	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0155796_31	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0155796_31	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0155796_31	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0155796_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0155796_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0155796_31	COG	COG0863	DNA modification methylase	NA
UHGV-0155796_31	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0155796_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0155796_33	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0155796_33	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0155796_33	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0155796_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0155796_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0155796_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0155796_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0155796_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0155796_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0155796_34	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0155796_34	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0155796_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0155796_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0155796_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0155796_35	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0155796_35	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0155796_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0155796_35	COG	COG2369	NA	NA
UHGV-0155796_35	Structural annotation	PF06152	NA	NA
UHGV-0155796_36	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0155796_36	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0155796_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0155796_37	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0155796_37	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0155796_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0155796_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0155796_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0155796_37	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0155796_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0155796_38	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0155796_39	PHROG	phrog_3366	NA	unknown function
UHGV-0155796_39	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0155796_39	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0155796_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0155796_40	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0155796_40	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0155796_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0155796_40	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0155796_41	PHROG	phrog_3266	tail completion	connector
UHGV-0155796_41	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0155796_41	Structural annotation	PF12691	NA	NA
UHGV-0155796_42	PHROG	phrog_3099	NA	unknown function
UHGV-0155796_42	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0155796_42	Structural annotation	TIGR02126	NA	NA
UHGV-0155796_43	PHROG	phrog_11299	NA	unknown function
UHGV-0155796_43	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0155796_43	Structural annotation	PF10666	NA	NA
UHGV-0155796_44	PHROG	phrog_706	NA	unknown function
UHGV-0155796_44	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0155796_44	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0155796_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0155796_44	Structural annotation	PF06854	NA	NA
UHGV-0155796_45	PHROG	phrog_17658	NA	unknown function
UHGV-0155796_45	UniRef90	UniRef90_A0A316PG91	zinc_ribbon_2 domain-containing protein	NA
UHGV-0155796_45	eggNOG-mapper	768710.DesyoDRAFT_1122	NA	NA
UHGV-0155796_45	Structural annotation	PF18116, COG3402	NA	NA
UHGV-0155796_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0155796_46	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0155796_46	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0155796_46	COG	COG1511	NA	NA
UHGV-0155796_46	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0155796_47	PHROG	phrog_1194	NA	unknown function
UHGV-0155796_47	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0155796_47	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0155796_48	PHROG	phrog_32308	NA	unknown function
UHGV-0155796_48	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0155796_48	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0155796_48	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0155796_49	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0155796_49	Structural annotation	PF14594	NA	NA
UHGV-0155796_50	Structural annotation	PF20942, NF041894, COG5456	NA	NA
UHGV-0155796_52	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0155796_52	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0155796_53	eggNOG-mapper	1384065.JAGS01000001_gene2507	domain, Protein	NA
UHGV-0155796_53	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0155796_53	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0155796_54	PHROG	phrog_27545	NA	unknown function
UHGV-0155796_54	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0155796_54	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0155796_54	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0155796_54	Structural annotation	PF16170	NA	NA
UHGV-0155796_55	PHROG	phrog_937	hemolysin	other
UHGV-0155796_55	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0155796_57	PHROG	phrog_13256	NA	unknown function
UHGV-0155796_57	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0155796_58	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0155796_58	PHROG	phrog_670	endolysin	lysis
UHGV-0155796_58	UniRef90	UniRef90_A0A3D4D877	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0155796_58	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-0155796_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0155796_58	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0155796_58	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0155796_60	PHROG	phrog_3754	NA	unknown function
UHGV-0155796_60	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0155796_61	PHROG	phrog_21718	NA	unknown function
UHGV-0155796_61	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0155796_62	PHROG	phrog_22984	NA	unknown function
UHGV-0155796_63	PHROG	phrog_16490	NA	unknown function
UHGV-0155796_63	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0155796_65	PHROG	phrog_20016	NA	unknown function
UHGV-0155796_65	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0155796_65	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0155796_65	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0155796_66	PHROG	phrog_28802	NA	unknown function
UHGV-0155796_66	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0155796_67	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0155796_68	UniRef90	UniRef90_A0A1C5U3K6	CAAX amino terminal protease self- immunity	NA
UHGV-0155796_68	eggNOG-mapper	1280698.AUJS01000091_gene611	CAAX protease self-immunity	NA
UHGV-0155796_68	COG	COG1266	Membrane protease YdiL, CAAX protease family	NA
UHGV-0155796_69	KOfam	K02448	norD; nitric oxide reductase NorD protein	NA
UHGV-0155796_69	UniRef90	UniRef90_A0A329U7E4	VWFA domain-containing protein	NA
UHGV-0155796_69	eggNOG-mapper	1519439.JPJG01000016_gene354	von Willebrand factor (vWF) type A domain	NA
UHGV-0155796_69	COG	COG4548	Nitric oxide reductase activation protein	NA