UHGV-0155837

Genome information

Genome length 26,941 bps

CDS count 54

Completeness 59.80% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155837
vOTU ID	vOTU-027721
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_465736
BioSample	SAMN06112002
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.39
Jumbo phage	No

Genome content
Genome length	26,941 bps
GC content	40.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.49%
Average CDS length	454.33 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155837_1	PHROG	phrog_7964	NA	unknown function
UHGV-0155837_1	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0155837_1	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0155837_1	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0155837_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0155837_1	Structural annotation	MF_00523, NF040481, COG1043	NA	NA
UHGV-0155837_2	PHROG	phrog_6058	NA	unknown function
UHGV-0155837_2	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0155837_2	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0155837_3	AcrCatalog	cluster_17974	NA	NA
UHGV-0155837_7	Structural annotation	NF011879	NA	NA
UHGV-0155837_8	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0155837_9	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0155837_9	UniRef90	UniRef90_A0A1V5UPJ3	ERF superfamily protein	NA
UHGV-0155837_9	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0155837_9	Pfam	PF04404	ERF superfamily	ERF
UHGV-0155837_9	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0155837_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0155837_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0155837_10	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-0155837_10	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0155837_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0155837_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0155837_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0155837_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0155837_10	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0155837_11	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0155837_11	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-0155837_11	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0155837_11	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0155837_11	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0155837_12	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0155837_12	PHROG	phrog_11992	NA	unknown function
UHGV-0155837_12	UniRef90	UniRef90_A0A395X7I4	DNA primase	NA
UHGV-0155837_12	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0155837_12	PADLOC	drt-UG29	DRT	DRT
UHGV-0155837_12	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0155837_12	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0155837_12	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0155837_13	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0155837_13	UniRef90	UniRef90_A0A412EL97	NA	NA
UHGV-0155837_13	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0155837_13	Pfam	PF06048	NA	DUF927
UHGV-0155837_13	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0155837_13	COG	COG5519	NA	NA
UHGV-0155837_13	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0155837_15	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0155837_15	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0155837_19	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0155837_19	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0155837_19	UniRef90	UniRef90_A0A8J6MB86	Lar family restriction alleviation protein	NA
UHGV-0155837_19	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0155837_19	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0155837_19	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0155837_20	PHROG	phrog_4601	NA	unknown function
UHGV-0155837_21	PHROG	phrog_15198	NA	unknown function
UHGV-0155837_21	UniRef90	UniRef90_A0A373NR41	NA	NA
UHGV-0155837_21	Pfam	PF04448	NA	DUF551
UHGV-0155837_21	Structural annotation	PF04448	NA	NA
UHGV-0155837_23	PHROG	phrog_20593	NA	unknown function
UHGV-0155837_24	PHROG	phrog_20593	NA	unknown function
UHGV-0155837_25	Structural annotation	PF06107, COG4481	NA	NA
UHGV-0155837_27	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155837_27	UniRef90	UniRef90_UPI0013002188	helix-turn-helix transcriptional regulator	NA
UHGV-0155837_27	eggNOG-mapper	1356854.N007_05270	NA	NA
UHGV-0155837_27	Structural annotation	PF18340	NA	NA
UHGV-0155837_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0155837_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0155837_30	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0155837_30	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0155837_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0155837_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0155837_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0155837_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0155837_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0155837_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0155837_31	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0155837_31	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0155837_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0155837_32	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-0155837_32	UniRef90	UniRef90_A0A5J5HFE5	Ribbon-helix-helix domain-containing protein	NA
UHGV-0155837_32	Structural annotation	PF19891, NF041793, COG4877	NA	NA
UHGV-0155837_33	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155837_33	UniRef90	UniRef90_A0A6L8SWJ4	AP2 domain-containing protein	NA
UHGV-0155837_33	eggNOG-mapper	756499.Desde_1078	NA	NA
UHGV-0155837_33	Structural annotation	PF10729, MF_01580, NF007510	NA	NA
UHGV-0155837_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0155837_34	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-0155837_34	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0155837_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0155837_34	COG	COG2369	NA	NA
UHGV-0155837_34	Structural annotation	PF06152	NA	NA
UHGV-0155837_35	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-0155837_35	UniRef90	UniRef90_A0A173R8U8	Ribbon-helix-helix domain	NA
UHGV-0155837_35	eggNOG-mapper	476272.RUMHYD_01909	Ribbon-helix-helix domain	NA
UHGV-0155837_35	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0155837_35	Structural annotation	PF12651, COG4710	NA	NA
UHGV-0155837_36	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155837_36	UniRef90	UniRef90_UPI0006B9EE43	AP2 domain-containing protein	NA
UHGV-0155837_36	eggNOG-mapper	397290.C810_01484	NA	NA
UHGV-0155837_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0155837_37	UniRef90	UniRef90_A0A3D0XVN5	Capsid protein (Fragment)	NA
UHGV-0155837_37	eggNOG-mapper	1125725.HMPREF1325_1324	Phage minor capsid protein 2	NA
UHGV-0155837_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0155837_37	COG	COG2369	NA	NA
UHGV-0155837_38	PHROG	phrog_3754	NA	unknown function
UHGV-0155837_38	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0155837_39	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155837_39	UniRef90	UniRef90_UPI0015D4DC00	NUMOD4 domain-containing protein	NA
UHGV-0155837_39	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-0155837_39	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0155837_39	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0155837_39	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0155837_39	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0155837_39	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0155837_40	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0155837_40	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0155837_41	PHROG	phrog_21718	NA	unknown function
UHGV-0155837_41	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0155837_42	PHROG	phrog_22984	NA	unknown function
UHGV-0155837_43	PHROG	phrog_16490	NA	unknown function
UHGV-0155837_43	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0155837_44	PHROG	phrog_20016	NA	unknown function
UHGV-0155837_44	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0155837_45	PHROG	phrog_28802	NA	unknown function
UHGV-0155837_45	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0155837_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0155837_46	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0155837_46	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0155837_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0155837_47	PHROG	phrog_544	major head protein	head and packaging
UHGV-0155837_47	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0155837_47	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0155837_47	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0155837_47	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0155837_48	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0155837_48	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0155837_49	PHROG	phrog_1233	NA	unknown function
UHGV-0155837_49	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0155837_50	PHROG	phrog_1129	holin	lysis
UHGV-0155837_50	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0155837_50	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0155837_50	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0155837_50	Structural annotation	PF06946	NA	NA
UHGV-0155837_52	PHROG	phrog_8680	NA	unknown function
UHGV-0155837_52	UniRef90	UniRef90_A0A412EKN2	NA	NA
UHGV-0155837_52	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0155837_52	Pfam	PF14386	NA	DUF4417
UHGV-0155837_52	Structural annotation	PF14386	NA	NA
UHGV-0155837_53	UniRef90	UniRef90_A0A2U2EL81	Keratin	NA
UHGV-0155837_54	eggNOG-mapper	476272.RUMHYD_01779	NA	NA