UHGV-0155866

Genome information

Genome length 44,665 bps

CDS count 70

Completeness 99.90% (high-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155866
vOTU ID	vOTU-007453
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_448129
BioSample	SAMN05971701
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.81
Jumbo phage	No

Genome content
Genome length	44,665 bps
GC content	52.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	89.50%
Average CDS length	573.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155866_1	KOfam	K14059	int; integrase	NA
UHGV-0155866_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0155866_1	UniRef90	UniRef90_A0A810Q0L1	Tyr recombinase domain-containing protein	NA
UHGV-0155866_1	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0155866_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0155866_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0155866_1	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0155866_2	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0155866_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155866_2	Structural annotation	PF13443, TIGR03070, COG3655	NA	NA
UHGV-0155866_5	UniRef90	UniRef90_UPI001956428F	phosphatase	NA
UHGV-0155866_6	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0155866_6	eggNOG-mapper	742738.HMPREF9460_00725	NA	NA
UHGV-0155866_7	UniRef90	UniRef90_A0A3D1LEC5	VPS37 C-terminal domain-containing protein	NA
UHGV-0155866_7	eggNOG-mapper	485916.Dtox_3705	NA	NA
UHGV-0155866_7	Structural annotation	PF13022	NA	NA
UHGV-0155866_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0155866_8	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0155866_8	UniRef90	UniRef90_A0A6N7TQ80	PBSX family phage terminase large subunit	NA
UHGV-0155866_8	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0155866_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0155866_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0155866_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0155866_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0155866_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0155866_9	PHROG	phrog_15404	NA	unknown function
UHGV-0155866_9	eggNOG-mapper	397291.C804_01613	NA	NA
UHGV-0155866_12	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0155866_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0155866_12	UniRef90	UniRef90_W1I5I1	Uncultured bacterium extrachromosomal DNA RGI00017	NA
UHGV-0155866_12	eggNOG-mapper	1231336.L248_2264	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0155866_12	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0155866_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0155866_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0155866_13	eggNOG-mapper	1235802.C823_03074	NA	NA
UHGV-0155866_14	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0155866_14	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0155866_14	UniRef90	UniRef90_A0A0H5Q802	AAA_31 domain-containing protein	NA
UHGV-0155866_14	eggNOG-mapper	537013.CLOSTMETH_01807	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0155866_14	Pfam	PF13614	AAA domain	AAA_31
UHGV-0155866_14	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0155866_14	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0155866_15	UniRef90	UniRef90_W1I1D6	Uncultured bacterium extrachromosomal DNA RGI00017	NA
UHGV-0155866_16	eggNOG-mapper	1235835.C814_03342	NA	NA
UHGV-0155866_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0155866_18	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0155866_18	UniRef90	UniRef90_A0A0H5Q9V6	SF4 helicase domain-containing protein	NA
UHGV-0155866_18	eggNOG-mapper	1423743.JCM14108_3042	DnaB-like helicase C terminal domain	NA
UHGV-0155866_18	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0155866_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0155866_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0155866_18	Structural annotation	PF03796, PF13155, MF_04154, NF005369, TIGR01391, COG0305	NA	NA
UHGV-0155866_21	Structural annotation	PF03885	NA	NA
UHGV-0155866_22	UniRef90	UniRef90_A0A810Q1T1	HTH cro/C1-type domain-containing protein	NA
UHGV-0155866_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155866_22	COG	COG3780	DNA endonuclease related to intein-encoded endonucleases	NA
UHGV-0155866_22	Structural annotation	PF01381, MF_00535, NF007257, COG3655	NA	NA
UHGV-0155866_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0155866_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0155866_23	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0155866_23	eggNOG-mapper	697329.Rumal_2813	Helix-turn-helix XRE-family like proteins	NA
UHGV-0155866_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155866_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0155866_23	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0155866_24	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0155866_28	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0155866_28	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0155866_28	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0155866_28	Pfam	PF04404	ERF superfamily	ERF
UHGV-0155866_28	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0155866_29	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0155866_29	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0155866_29	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0155866_29	Structural annotation	PF05772	NA	NA
UHGV-0155866_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0155866_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0155866_31	UniRef90	UniRef90_A0A810PUK9	Single-stranded DNA-binding protein	NA
UHGV-0155866_31	eggNOG-mapper	1235797.C816_01960	Single-strand binding protein family	NA
UHGV-0155866_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0155866_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0155866_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0155866_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0155866_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0155866_32	PHROG	phrog_15768	NA	unknown function
UHGV-0155866_32	eggNOG-mapper	33035.JPJF01000122_gene2459	NA	NA
UHGV-0155866_32	Pfam	PF19808	NA	DUF6291
UHGV-0155866_32	Structural annotation	PF19808	NA	NA
UHGV-0155866_33	PHROG	phrog_9804	NA	unknown function
UHGV-0155866_33	UniRef90	UniRef90_UPI0015C5D332	replicative helicase loader/inhibitor	NA
UHGV-0155866_33	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0155866_33	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0155866_33	Structural annotation	PF11417	NA	NA
UHGV-0155866_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0155866_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0155866_34	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0155866_34	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0155866_34	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0155866_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0155866_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0155866_35	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0155866_36	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0155866_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0155866_36	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0155866_36	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0155866_36	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0155866_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0155866_36	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0155866_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0155866_37	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0155866_37	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0155866_37	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0155866_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0155866_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0155866_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0155866_43	PHROG	phrog_18716	NA	unknown function
UHGV-0155866_43	UniRef90	UniRef90_R6RP50	NA	NA
UHGV-0155866_43	eggNOG-mapper	575540.Isop_2447	NA	NA
UHGV-0155866_43	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0155866_43	Structural annotation	PF18909	NA	NA
UHGV-0155866_46	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0155866_46	Structural annotation	TIGR01636	NA	NA
UHGV-0155866_47	PHROG	phrog_25567	NA	unknown function
UHGV-0155866_47	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0155866_47	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0155866_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155866_47	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0155866_50	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0155866_50	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0155866_50	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0155866_50	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0155866_50	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0155866_50	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0155866_50	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0155866_50	COG	COG0863	DNA modification methylase	NA
UHGV-0155866_50	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0155866_52	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0155866_52	PHROG	phrog_10250	NA	unknown function
UHGV-0155866_52	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0155866_52	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0155866_52	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0155866_52	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0155866_52	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0155866_52	COG	COG1783	Phage terminase large subunit	NA
UHGV-0155866_52	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0155866_53	PHROG	phrog_64	portal protein	head and packaging
UHGV-0155866_53	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0155866_53	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0155866_53	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0155866_53	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0155866_54	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0155866_54	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0155866_54	eggNOG-mapper	1111135.HMPREF1248_0663	cell adhesion	NA
UHGV-0155866_54	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0155866_54	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0155866_54	COG	COG2369	NA	NA
UHGV-0155866_54	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0155866_55	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0155866_55	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0155866_55	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0155866_55	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0155866_55	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0155866_56	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0155866_56	Structural annotation	PF06810	NA	NA
UHGV-0155866_57	PHROG	phrog_544	major head protein	head and packaging
UHGV-0155866_57	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0155866_57	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0155866_57	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0155866_59	PHROG	phrog_17977	NA	unknown function
UHGV-0155866_59	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0155866_59	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0155866_60	PHROG	phrog_17405	head protein	head and packaging
UHGV-0155866_60	Structural annotation	PF11367	NA	NA
UHGV-0155866_61	PHROG	phrog_885	major tail protein	tail
UHGV-0155866_61	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0155866_61	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0155866_61	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0155866_63	PHROG	phrog_7115	NA	unknown function
UHGV-0155866_63	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-0155866_63	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0155866_63	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0155866_63	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0155866_64	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0155866_64	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0155866_64	COG	COG1511	NA	NA
UHGV-0155866_64	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0155866_65	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0155866_65	UniRef90	UniRef90_A0A374UNT1	MtfA protein	NA
UHGV-0155866_65	eggNOG-mapper	877414.ATWA01000019_gene2049	NA	NA
UHGV-0155866_65	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0155866_66	PHROG	phrog_3558	tail protein	tail
UHGV-0155866_66	UniRef90	UniRef90_A0A847D2L1	Prophage_tail domain-containing protein	NA
UHGV-0155866_66	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0155866_66	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0155866_66	COG	COG4926	Phage-related protein	NA
UHGV-0155866_66	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0155866_67	PHROG	phrog_372	tail protein	tail
UHGV-0155866_67	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0155866_67	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0155866_67	Pfam	PF05895	NA	DUF859
UHGV-0155866_67	COG	COG4675	Phage tail collar domain	NA
UHGV-0155866_67	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0155866_68	PHROG	phrog_1863	NA	unknown function
UHGV-0155866_68	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0155866_69	PHROG	phrog_15594	NA	unknown function
UHGV-0155866_69	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0155866_69	Structural annotation	PF16640, TIGR04488	NA	NA