UHGV-0155880

Genome information

Genome length 28,309 bps

CDS count 41

Completeness 73.15% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155880
vOTU ID	vOTU-022106
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_461319
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.55
Jumbo phage	No

Genome content
Genome length	28,309 bps
GC content	44.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	89.12%
Average CDS length	620.85 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155880_1	UniRef90	UniRef90_A0A174VJJ8	Cell wall binding repeat-containing protein /mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA
UHGV-0155880_1	eggNOG-mapper	742733.HMPREF9469_00413	NA	NA
UHGV-0155880_2	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0155880_2	PHROG	phrog_7	endolysin	lysis
UHGV-0155880_2	UniRef90	UniRef90_R5IS13	Lysozyme	NA
UHGV-0155880_2	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0155880_2	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0155880_2	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0155880_2	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0155880_2	HAMAP	MF_04110	Endolysin	NA
UHGV-0155880_2	Structural annotation	PF19127, MF_04110, TIGR04035, COG3772	NA	NA
UHGV-0155880_3	PHROG	phrog_1129	holin	lysis
UHGV-0155880_3	UniRef90	UniRef90_A0A3R6U6I1	Enolase	NA
UHGV-0155880_3	eggNOG-mapper	1321782.HMPREF1986_00360	NA	NA
UHGV-0155880_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0155880_3	Structural annotation	PF06946	NA	NA
UHGV-0155880_4	PHROG	phrog_4105	NA	unknown function
UHGV-0155880_4	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0155880_5	PHROG	phrog_1382	NA	unknown function
UHGV-0155880_5	eggNOG-mapper	411902.CLOBOL_00118	NA	NA
UHGV-0155880_5	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0155880_5	Structural annotation	NF040910	NA	NA
UHGV-0155880_6	PHROG	phrog_1382	NA	unknown function
UHGV-0155880_6	UniRef90	UniRef90_A0A3E2UAD4	ASCH domain-containing protein	NA
UHGV-0155880_6	eggNOG-mapper	1140002.I570_03996	NA	NA
UHGV-0155880_6	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0155880_6	Structural annotation	NF040910	NA	NA
UHGV-0155880_7	eggNOG-mapper	1163671.JAGI01000002_gene1201	NA	NA
UHGV-0155880_8	UniRef90	UniRef90_UPI000C7AC03D	fibronectin type III domain-containing protein	NA
UHGV-0155880_8	eggNOG-mapper	742733.HMPREF9469_00967	NA	NA
UHGV-0155880_8	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0155880_8	Structural annotation	PF21722, PF20942, TIGR04488, COG3401	NA	NA
UHGV-0155880_9	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-0155880_10	PHROG	phrog_18725	NA	unknown function
UHGV-0155880_10	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-0155880_11	PHROG	phrog_13879	NA	unknown function
UHGV-0155880_11	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0155880_11	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0155880_12	PHROG	phrog_1194	NA	unknown function
UHGV-0155880_12	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0155880_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0155880_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0155880_13	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0155880_13	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0155880_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0155880_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0155880_14	PHROG	phrog_8355	NA	unknown function
UHGV-0155880_14	UniRef90	UniRef90_UPI0011579C35	Gp15 family bacteriophage protein	NA
UHGV-0155880_14	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0155880_14	Structural annotation	PF06854	NA	NA
UHGV-0155880_15	PHROG	phrog_8300	NA	unknown function
UHGV-0155880_15	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0155880_15	Structural annotation	PF06854	NA	NA
UHGV-0155880_16	PHROG	phrog_820	major tail protein	tail
UHGV-0155880_16	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0155880_16	COG	COG5492	NA	NA
UHGV-0155880_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0155880_17	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0155880_17	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0155880_17	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0155880_17	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0155880_17	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0155880_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0155880_18	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0155880_19	PHROG	phrog_8710	NA	unknown function
UHGV-0155880_19	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0155880_19	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0155880_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0155880_20	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0155880_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0155880_21	UniRef90	UniRef90_A0A3R6QST7	Phage capsid protein	NA
UHGV-0155880_21	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0155880_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0155880_22	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0155880_22	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0155880_23	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0155880_23	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0155880_23	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0155880_23	Pfam	PF14359	NA	DUF4406
UHGV-0155880_23	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0155880_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0155880_25	UniRef90	UniRef90_A0A416KE36	Minor capsid protein	NA
UHGV-0155880_25	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0155880_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0155880_25	COG	COG2369	NA	NA
UHGV-0155880_25	Structural annotation	PF06152	NA	NA
UHGV-0155880_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0155880_27	UniRef90	UniRef90_A0A3R6LPA5	Capsid protein	NA
UHGV-0155880_27	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0155880_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0155880_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0155880_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0155880_28	UniRef90	UniRef90_A0A3R6QNE9	Terminase	NA
UHGV-0155880_28	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0155880_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0155880_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0155880_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0155880_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0155880_29	UniRef90	UniRef90_A0A3R6SWW3	Terminase small subunit	NA
UHGV-0155880_29	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0155880_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0155880_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0155880_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0155880_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0155880_31	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0155880_31	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-0155880_31	Structural annotation	PF07374	NA	NA
UHGV-0155880_32	UniRef90	UniRef90_R6ZHB9	Putative bacteriocin ABC transporter	NA
UHGV-0155880_32	eggNOG-mapper	742733.HMPREF9469_02894	NA	NA
UHGV-0155880_32	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0155880_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0155880_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0155880_35	UniRef90	UniRef90_A0A1Q6KUL6	PAPS_reduct domain-containing protein	NA
UHGV-0155880_35	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0155880_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0155880_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0155880_35	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0155880_39	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0155880_39	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0155880_39	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0155880_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0155880_39	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA