UHGV-0155928

Genome information

Genome length 38,015 bps

CDS count 60

Completeness 82.24% (medium-quality)

geNomad score 0.9582

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155928
vOTU ID	vOTU-027301
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_453161
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9582
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.56
Jumbo phage	No

Genome content
Genome length	38,015 bps
GC content	48.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	88.86%
Average CDS length	566.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155928_3	PHROG	phrog_585	NA	unknown function
UHGV-0155928_3	UniRef90	UniRef90_A0A412CGE3	NA	NA
UHGV-0155928_3	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0155928_3	Pfam	PF10711	NA	DUF2513
UHGV-0155928_3	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0155928_7	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0155928_7	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0155928_8	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0155928_8	UniRef90	UniRef90_R4KDF2	PC4 domain-containing protein	NA
UHGV-0155928_8	eggNOG-mapper	86416.Clopa_3760	Transcriptional Coactivator p15 (PC4)	NA
UHGV-0155928_8	Pfam	PF02229	Transcriptional Coactivator p15 (PC4)	PC4
UHGV-0155928_8	COG	COG4443	NA	NA
UHGV-0155928_8	Structural annotation	COG4443	NA	NA
UHGV-0155928_11	UniRef90	UniRef90_UPI000689CC9F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0155928_11	eggNOG-mapper	1157490.EL26_01850	NA	NA
UHGV-0155928_11	Structural annotation	PF14058	NA	NA
UHGV-0155928_12	PHROG	phrog_8470	NA	unknown function
UHGV-0155928_12	UniRef90	UniRef90_R5PSC3	Ribosomal_S27 domain-containing protein	NA
UHGV-0155928_12	eggNOG-mapper	717606.PaecuDRAFT_3105	PcfJ-like protein	NA
UHGV-0155928_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0155928_12	Structural annotation	PF14284	NA	NA
UHGV-0155928_13	PHROG	phrog_15609	NA	unknown function
UHGV-0155928_13	UniRef90	UniRef90_UPI0013D36094	NA	NA
UHGV-0155928_13	eggNOG-mapper	1501230.ET33_21155	NA	NA
UHGV-0155928_13	Pfam	PF11300	NA	DUF3102
UHGV-0155928_13	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0155928_13	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0155928_18	PHROG	phrog_1672	NA	unknown function
UHGV-0155928_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0155928_19	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0155928_19	eggNOG-mapper	927704.SELR_11130	NA	NA
UHGV-0155928_19	Structural annotation	PF21578	NA	NA
UHGV-0155928_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0155928_20	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0155928_20	UniRef90	UniRef90_A0A3C1IQM4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0155928_20	eggNOG-mapper	521098.Aaci_1498	Endodeoxyribonuclease RusA	NA
UHGV-0155928_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0155928_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0155928_20	Structural annotation	PF05866, MF_00107, NF007305, COG4570	NA	NA
UHGV-0155928_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0155928_21	UniRef90	UniRef90_A0A1I0FCM6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0155928_21	eggNOG-mapper	1262914.BN533_01942	NA	NA
UHGV-0155928_21	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0155928_22	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0155928_22	UniRef90	UniRef90_A0A139CFP9	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0155928_22	eggNOG-mapper	1262914.BN533_00789	NA	NA
UHGV-0155928_22	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0155928_22	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0155928_23	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0155928_23	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0155928_23	UniRef90	UniRef90_UPI000F0C09AB	phage terminase large subunit family protein	NA
UHGV-0155928_23	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-0155928_23	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0155928_23	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0155928_23	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0155928_23	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0155928_23	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0155928_24	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0155928_24	UniRef90	UniRef90_UPI000D1063A5	NA	NA
UHGV-0155928_24	eggNOG-mapper	1262914.BN533_00292	NA	NA
UHGV-0155928_24	Pfam	PF19645	NA	DUF6148
UHGV-0155928_24	Structural annotation	PF19645	NA	NA
UHGV-0155928_25	PHROG	phrog_21	portal protein	head and packaging
UHGV-0155928_25	UniRef90	UniRef90_A0A1M6SL22	Phage portal protein, lambda family	NA
UHGV-0155928_25	eggNOG-mapper	1262914.BN533_00784	Phage portal protein	NA
UHGV-0155928_25	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0155928_25	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0155928_25	COG	COG5511	Phage capsid protein	NA
UHGV-0155928_25	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0155928_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0155928_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0155928_26	UniRef90	UniRef90_UPI000F0C7B06	Clp protease ClpP	NA
UHGV-0155928_26	eggNOG-mapper	1064535.MELS_1094	Clp protease	NA
UHGV-0155928_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0155928_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0155928_26	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0155928_27	PHROG	phrog_49	head decoration	head and packaging
UHGV-0155928_27	UniRef90	UniRef90_UPI000F0CF163	head decoration protein	NA
UHGV-0155928_27	eggNOG-mapper	1064535.MELS_1095	Bacteriophage lambda head decoration protein D	NA
UHGV-0155928_27	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0155928_27	Structural annotation	PF02924	NA	NA
UHGV-0155928_28	PHROG	phrog_29	major head protein	head and packaging
UHGV-0155928_28	UniRef90	UniRef90_UPI000F0CF09A	major capsid protein	NA
UHGV-0155928_28	eggNOG-mapper	1273103.NM10_03136	Phage major capsid protein E	NA
UHGV-0155928_28	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0155928_28	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0155928_29	Structural annotation	PF10208	NA	NA
UHGV-0155928_30	PHROG	phrog_2551	minor tail protein	tail
UHGV-0155928_30	UniRef90	UniRef90_R6I9C8	Sugar ABC transporter ATP-binding protein	NA
UHGV-0155928_30	eggNOG-mapper	1262914.BN533_01003	Product inferred by homology to UniProt	NA
UHGV-0155928_30	Structural annotation	PF13856	NA	NA
UHGV-0155928_31	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0155928_31	UniRef90	UniRef90_UPI001C063072	phage tail protein	NA
UHGV-0155928_31	eggNOG-mapper	1262914.BN533_00997	Prophage minor tail protein Z (GPZ)	NA
UHGV-0155928_31	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0155928_31	Structural annotation	PF06763	NA	NA
UHGV-0155928_32	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0155928_32	eggNOG-mapper	1262914.BN533_00996	NA	NA
UHGV-0155928_32	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0155928_33	PHROG	phrog_4089	NA	unknown function
UHGV-0155928_33	eggNOG-mapper	1262914.BN533_01006	Product inferred by homology to UniProt	NA
UHGV-0155928_34	KOfam	K06907	NA	NA
UHGV-0155928_34	PHROG	phrog_23	tail sheath	tail
UHGV-0155928_34	UniRef90	UniRef90_A0A2A2IKV4	Phage tail protein	NA
UHGV-0155928_34	eggNOG-mapper	572547.Amico_1114	tail sheath protein	NA
UHGV-0155928_34	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0155928_34	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0155928_35	KOfam	K06908	NA	NA
UHGV-0155928_35	PHROG	phrog_55	head closure	connector
UHGV-0155928_35	UniRef90	UniRef90_R6J7N4	Phage major tail tube protein	NA
UHGV-0155928_35	eggNOG-mapper	1262914.BN533_01373	tail tube protein	NA
UHGV-0155928_35	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0155928_35	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0155928_35	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0155928_36	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0155928_36	UniRef90	UniRef90_R6ILQ4	Mu-like prophage FluMu protein gp41	NA
UHGV-0155928_36	eggNOG-mapper	1262914.BN533_01372	NA	NA
UHGV-0155928_36	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0155928_36	Structural annotation	PF10109	NA	NA
UHGV-0155928_38	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0155928_38	UniRef90	UniRef90_A0A2A2IKN4	Phage tail tape measure protein	NA
UHGV-0155928_38	eggNOG-mapper	936573.HMPREF1147_1730	Phage-related minor tail protein	NA
UHGV-0155928_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0155928_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0155928_38	COG	COG5283	Phage-related tail protein	NA
UHGV-0155928_38	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0155928_39	PHROG	phrog_46	tail protein	tail
UHGV-0155928_39	UniRef90	UniRef90_R6IAK0	Phage Tail Protein X	NA
UHGV-0155928_39	eggNOG-mapper	1262914.BN533_01376	Phage Tail Protein X	NA
UHGV-0155928_39	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0155928_39	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0155928_39	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0155928_40	KOfam	K06905	NA	NA
UHGV-0155928_40	PHROG	phrog_52	tail protein	tail
UHGV-0155928_40	UniRef90	UniRef90_UPI001CD5459F	transcriptional regulator	NA
UHGV-0155928_40	eggNOG-mapper	1280706.AUJE01000010_gene671	COG3500 Phage protein D	NA
UHGV-0155928_40	COG	COG3500	NA	NA
UHGV-0155928_40	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0155928_41	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0155928_41	UniRef90	UniRef90_A0A6N7VMZ2	Phage baseplate assembly protein V	NA
UHGV-0155928_41	eggNOG-mapper	936573.HMPREF1147_1732	Phage baseplate assembly protein V	NA
UHGV-0155928_41	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0155928_41	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0155928_41	Structural annotation	PF04717, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0155928_42	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0155928_42	UniRef90	UniRef90_A0A1Q6RAC4	PaaR repeat-containing protein	NA
UHGV-0155928_42	eggNOG-mapper	927704.SELR_16680	PAAR repeat-containing protein	NA
UHGV-0155928_42	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0155928_42	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-0155928_42	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-0155928_43	KOfam	K06906	NA	NA
UHGV-0155928_43	PHROG	phrog_76	tail protein	tail
UHGV-0155928_43	UniRef90	UniRef90_A0A6N7W1P7	Phage tail protein	NA
UHGV-0155928_43	eggNOG-mapper	1262914.BN533_01714	Phage P2 GpU	NA
UHGV-0155928_43	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0155928_43	COG	COG3499	NA	NA
UHGV-0155928_43	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0155928_44	KOfam	K06903	NA	NA
UHGV-0155928_44	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0155928_44	UniRef90	UniRef90_A0A348AJ14	Gene 25-like lysozyme	NA
UHGV-0155928_44	eggNOG-mapper	572547.Amico_1105	GPW Gp25 family protein	NA
UHGV-0155928_44	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0155928_44	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0155928_44	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0155928_45	PHROG	phrog_6	baseplate protein	tail
UHGV-0155928_45	UniRef90	UniRef90_A0A2A2IKV6	Baseplate protein	NA
UHGV-0155928_45	eggNOG-mapper	1262914.BN533_01712	Baseplate J-like protein	NA
UHGV-0155928_45	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0155928_45	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0155928_45	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0155928_46	PHROG	phrog_14404	baseplate protein	tail
UHGV-0155928_46	UniRef90	UniRef90_A0A2A2IJZ7	Phage tail protein I	NA
UHGV-0155928_46	eggNOG-mapper	1262914.BN533_01711	Phage tail protein (Tail_P2_I)	NA
UHGV-0155928_46	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0155928_46	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0155928_46	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0155928_46	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0155928_47	eggNOG-mapper	568816.Acin_1955	NA	NA
UHGV-0155928_47	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0155928_48	PHROG	phrog_31538	NA	unknown function
UHGV-0155928_48	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0155928_49	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0155928_49	UniRef90	UniRef90_UPI00195EB260	phage tail protein	NA
UHGV-0155928_49	eggNOG-mapper	927704.SELR_16630	Phage tail-collar fibre protein	NA
UHGV-0155928_49	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0155928_49	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0155928_49	Structural annotation	PF12571, COG5301	NA	NA
UHGV-0155928_50	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-0155928_51	PHROG	phrog_4209	tail fiber protein	tail
UHGV-0155928_51	eggNOG-mapper	1009370.ALO_01679	tail collar domain protein	NA
UHGV-0155928_51	COG	COG4675	Phage tail collar domain	NA
UHGV-0155928_53	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0155928_53	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0155928_53	Pfam	PF14301	NA	DUF4376
UHGV-0155928_53	Structural annotation	PF14301	NA	NA
UHGV-0155928_54	KOfam	K14059	int; integrase	NA
UHGV-0155928_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0155928_54	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-0155928_54	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0155928_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0155928_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0155928_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0155928_55	PHROG	phrog_13589	NA	unknown function
UHGV-0155928_55	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0155928_56	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0155928_57	PHROG	phrog_199	holin	lysis
UHGV-0155928_57	UniRef90	UniRef90_UPI001EDD344B	phage holin family protein	NA
UHGV-0155928_57	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-0155928_57	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0155928_57	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0155928_58	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0155928_58	PHROG	phrog_435	endolysin	lysis
UHGV-0155928_58	UniRef90	UniRef90_A0A848B600	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0155928_58	eggNOG-mapper	1123250.KB908415_gene1421	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0155928_58	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0155928_58	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0155928_58	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0155928_60	PHROG	phrog_21372	NA	unknown function
UHGV-0155928_60	UniRef90	UniRef90_A0A3C1IPT9	NA	NA
UHGV-0155928_60	eggNOG-mapper	401526.TcarDRAFT_0076	NA	NA
UHGV-0155928_60	Pfam	PF11148	NA	DUF2922