UHGV-0155980

Genome information

Genome length 39,518 bps

CDS count 70

Completeness 100.00% (complete)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0155980
vOTU ID	vOTU-046220
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_479704
BioSample	SAMN06115523
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.72
Jumbo phage	No

Genome content
Genome length	39,518 bps
GC content	53.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	94.09%
Average CDS length	536.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0155980_1	PHROG	phrog_15768	NA	unknown function
UHGV-0155980_1	eggNOG-mapper	642492.Clole_0798	NA	NA
UHGV-0155980_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0155980_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0155980_2	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0155980_2	UniRef90	UniRef90_A0A3A9ED12	ATP-binding protein	NA
UHGV-0155980_2	eggNOG-mapper	1232447.BAHW02000027_gene2105	NA	NA
UHGV-0155980_2	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0155980_2	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0155980_2	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0155980_3	PHROG	phrog_18306	NA	unknown function
UHGV-0155980_3	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0155980_5	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0155980_5	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0155980_5	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0155980_5	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0155980_5	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0155980_6	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0155980_6	UniRef90	UniRef90_A0A7V8QMV9	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0155980_6	eggNOG-mapper	684719.HIMB114_00008080	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0155980_6	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0155980_7	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0155980_7	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0155980_7	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0155980_10	PHROG	phrog_3392	NA	unknown function
UHGV-0155980_10	UniRef90	UniRef90_Q6J807	Pas24	NA
UHGV-0155980_10	eggNOG-mapper	1217710.F969_00044	NA	NA
UHGV-0155980_10	Pfam	PF04448	NA	DUF551
UHGV-0155980_10	Structural annotation	NF041588	NA	NA
UHGV-0155980_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0155980_15	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0155980_15	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0155980_15	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0155980_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0155980_16	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0155980_16	UniRef90	UniRef90_A0A3D3Y046	Chromosome partitioning protein ParB	NA
UHGV-0155980_16	eggNOG-mapper	985665.HPL003_12065	DNA methylase	NA
UHGV-0155980_16	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0155980_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0155980_16	COG	COG0863	DNA modification methylase	NA
UHGV-0155980_16	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0155980_17	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0155980_17	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0155980_17	UniRef90	UniRef90_A0A516MP09	Putative adenine modification enzyme	NA
UHGV-0155980_17	eggNOG-mapper	619693.HMPREF6745_2515	NA	NA
UHGV-0155980_17	Structural annotation	PF16092, MF_02210, NF007025, COG3818	NA	NA
UHGV-0155980_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0155980_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0155980_18	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0155980_18	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0155980_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0155980_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0155980_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0155980_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0155980_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0155980_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0155980_19	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0155980_19	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0155980_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0155980_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0155980_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0155980_20	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0155980_20	eggNOG-mapper	525255.HMPREF0077_0390	Phage minor capsid protein 2	NA
UHGV-0155980_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0155980_20	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0155980_20	COG	COG2369	NA	NA
UHGV-0155980_20	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0155980_22	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0155980_22	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0155980_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0155980_23	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0155980_23	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0155980_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0155980_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0155980_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0155980_23	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0155980_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0155980_24	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0155980_25	PHROG	phrog_3366	NA	unknown function
UHGV-0155980_25	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0155980_25	Pfam	PF20536	NA	DUF6751
UHGV-0155980_25	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0155980_26	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0155980_26	UniRef90	UniRef90_UPI00164EC49A	minor capsid protein	NA
UHGV-0155980_26	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0155980_26	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0155980_26	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0155980_27	PHROG	phrog_3266	tail completion	connector
UHGV-0155980_27	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0155980_27	Structural annotation	PF12691	NA	NA
UHGV-0155980_28	PHROG	phrog_3099	NA	unknown function
UHGV-0155980_28	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0155980_28	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0155980_29	PHROG	phrog_11299	NA	unknown function
UHGV-0155980_29	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0155980_29	Structural annotation	PF10666	NA	NA
UHGV-0155980_30	PHROG	phrog_706	NA	unknown function
UHGV-0155980_30	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0155980_30	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0155980_30	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0155980_30	Structural annotation	PF06854	NA	NA
UHGV-0155980_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0155980_31	eggNOG-mapper	1415775.U729_2614	phage tail tape measure protein	NA
UHGV-0155980_31	COG	COG1511	NA	NA
UHGV-0155980_32	PHROG	phrog_1194	NA	unknown function
UHGV-0155980_32	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0155980_33	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0155980_33	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0155980_33	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0155980_34	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0155980_34	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0155980_35	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0155980_35	Structural annotation	PF07238	NA	NA
UHGV-0155980_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0155980_39	PHROG	phrog_291	endolysin	lysis
UHGV-0155980_39	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-0155980_39	eggNOG-mapper	1123263.AUKY01000046_gene483	Glycosyl hydrolases family 25	NA
UHGV-0155980_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0155980_39	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0155980_39	COG	COG1388	LysM repeat	NA
UHGV-0155980_39	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0155980_40	PHROG	phrog_37604	NA	unknown function
UHGV-0155980_40	eggNOG-mapper	585501.HMPREF6123_0817	NA	NA
UHGV-0155980_41	PHROG	phrog_608	holin	lysis
UHGV-0155980_41	UniRef90	UniRef90_UPI0019604BA7	phage holin, LLH family	NA
UHGV-0155980_41	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0155980_41	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0155980_41	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0155980_42	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0155980_43	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0155980_45	PHROG	phrog_16490	NA	unknown function
UHGV-0155980_45	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0155980_46	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0155980_47	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0155980_48	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0155980_48	PHROG	phrog_2104	NA	unknown function
UHGV-0155980_48	UniRef90	UniRef90_A0A414P8A6	Helix-turn-helix domain-containing protein	NA
UHGV-0155980_48	eggNOG-mapper	1410631.JHWZ01000002_gene1263	sequence-specific DNA binding	NA
UHGV-0155980_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0155980_48	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0155980_48	Structural annotation	PF15731, NF007481, COG2944	NA	NA
UHGV-0155980_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0155980_50	PHROG	phrog_95	integrase	integration and excision
UHGV-0155980_50	UniRef90	UniRef90_UPI00106696FE	recombinase family protein	NA
UHGV-0155980_50	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0155980_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0155980_50	Pfam	PF07508	Recombinase	Recombinase
UHGV-0155980_50	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0155980_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0155980_50	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0155980_51	eggNOG-mapper	428127.EUBDOL_00130	sequence-specific DNA binding	NA
UHGV-0155980_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0155980_51	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0155980_52	eggNOG-mapper	877415.JNJQ01000019_gene1779	NA	NA
UHGV-0155980_52	Structural annotation	PF09624, PF12690, NF038353, COG5633	NA	NA
UHGV-0155980_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0155980_54	UniRef90	UniRef90_A0A374HKJ0	XRE family transcriptional regulator	NA
UHGV-0155980_54	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-0155980_54	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0155980_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0155980_54	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0155980_58	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0155980_58	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0155980_58	UniRef90	UniRef90_A0A252F729	Bro-N domain-containing protein	NA
UHGV-0155980_58	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0155980_58	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0155980_58	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0155980_58	COG	COG3617	Prophage antirepressor	NA
UHGV-0155980_58	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0155980_63	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0155980_63	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0155980_63	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0155980_63	Pfam	PF14359	NA	DUF4406
UHGV-0155980_63	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0155980_63	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0155980_67	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0155980_67	UniRef90	UniRef90_A0A3D3XZF3	YqaJ domain-containing protein	NA
UHGV-0155980_67	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0155980_67	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0155980_67	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0155980_67	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0155980_67	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0155980_68	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0155980_68	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0155980_68	UniRef90	UniRef90_A0A3D3Y007	Recombinase RecT	NA
UHGV-0155980_68	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0155980_68	Pfam	PF03837	RecT family	RecT
UHGV-0155980_68	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0155980_68	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0155980_68	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0155980_69	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0155980_69	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0155980_69	UniRef90	UniRef90_A0A1C5PRE8	Single-stranded DNA-binding protein	NA
UHGV-0155980_69	eggNOG-mapper	500632.CLONEX_02624	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0155980_69	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0155980_69	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0155980_69	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0155980_69	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0155980_69	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0155980_70	PHROG	phrog_16304	NA	unknown function
UHGV-0155980_70	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0155980_70	Pfam	PF19808	NA	DUF6291
UHGV-0155980_70	COG	COG3935	DNA replication protein DnaD	NA